RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ISG20L2Q9H9L3 353 aaKnown RBP14.94□□□□□ -0.02
CLN3-218ENST00000565688 AURKAIP1Q9NWT8 199 aaPredicted RBP14.94□□□□□ -0.02
CLN3-218ENST00000565688 ING3Q9NXR8 418 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 DHDHQ9UQ10 334 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 AMMECR1Q9Y4X0 333 aaPredicted RBP14.94□□□□□ -0.02
CLN3-218ENST00000565688 H0YJX3 145 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 H3BNX3 289 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 MAGEB3O15480 346 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 NFYBP25208 207 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 OR3A4PP47883 348 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 RAB40BQ12829 278 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 C17orf58Q2M2W7 97 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 TCTEX1D4Q5JR98 221 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 C10orf67Q8IYJ2 551 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 PXT1Q8NFP0 134 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 TSEN15Q8WW01 171 aaKnown RBP14.93□□□□□ -0.02
CLN3-218ENST00000565688 KIRREL1Q96J84 757 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 BARHL1Q9BZE3 327 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 PPIL3Q9H2H8 161 aaKnown RBP14.93□□□□□ -0.02
CLN3-218ENST00000565688 ERVK13-1Q9NX77 482 aa14.93□□□□□ -0.02
CLN3-218ENST00000565688 PF4P02776 101 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 AMY1AP04745 511 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 AMY2AP04746 511 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 CGB3P0DN86 165 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 CGB7P0DN87 165 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 RAB3AP20336 220 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 C21orf33P30042 268 aaPredicted RBP14.92□□□□□ -0.02
CLN3-218ENST00000565688 KCNJ3P48549 501 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 GBX2P52951 348 aaPredicted RBP14.92□□□□□ -0.02
CLN3-218ENST00000565688 SLC35A2P78381 396 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 PAN3Q58A45 887 aaKnown RBP14.92□□□□□ -0.02
CLN3-218ENST00000565688 FOXB2Q5VYV0 432 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 CCDC121Q6ZUS5 278 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 THNSL2Q86YJ6 484 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 RHOXF1Q8NHV9 184 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 MYDGFQ969H8 173 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 RPEQ96AT9 228 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 PDCD1LG2Q9BQ51 273 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 LINC00574Q9H8X3 128 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 CALYQ9NYX4 217 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 AASSQ9UDR5 926 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 ZNF281Q9Y2X9 895 aa14.92□□□□□ -0.02
CLN3-218ENST00000565688 MEIKINA0A087WXM9 373 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 CLIC3O95833 236 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 IGLL1P15814 213 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 GLP1RP43220 463 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 PAX5Q02548 391 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 IL13RA2Q14627 380 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 CNIH3Q8TBE1 160 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 TOMM40LQ969M1 308 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 NR1H4Q96RI1 486 aaPredicted RBP14.91□□□□□ -0.02
CLN3-218ENST00000565688 GPER1Q99527 375 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 ZNF649Q9BS31 505 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 C9orf16Q9BUW7 83 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 KIF25Q9UIL4 384 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 MOB4Q9Y3A3 225 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 HSPE1-MOB4S4R3N1 261 aa14.91□□□□□ -0.02
CLN3-218ENST00000565688 TRAV24A0A0B4J272 114 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 E9PI62 339 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 J3QR06 171 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 HSPB6O14558 160 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 DUS4LO95620 317 aaKnown RBP14.9□□□□□ -0.02
CLN3-218ENST00000565688 IL1AP01583 271 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 MADCAM1Q13477 382 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 RSU1Q15404 277 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 KLHL22Q53GT1 634 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 C9orf152Q5JTZ5 239 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 LPCAT4Q643R3 524 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 ZNF529Q6P280 563 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 SLC16A12Q6ZSM3 486 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 OSR2Q8N2R0 312 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 TNFAIP8L1Q8WVP5 186 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 RCC1LQ96I51 464 aaKnown RBP14.9□□□□□ -0.02
CLN3-218ENST00000565688 AMBNQ9NP70 447 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 MRPS18AQ9NVS2 196 aaKnown RBP14.9□□□□□ -0.02
CLN3-218ENST00000565688 IDI2-AS1Q9NZ38 188 aa14.9□□□□□ -0.02
CLN3-218ENST00000565688 RPL36Q9Y3U8 105 aaKnown RBP14.9□□□□□ -0.02
CLN3-218ENST00000565688 DNAH3Q8TD57 4116 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A18PA6NE21 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A16PA6NEW6 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A20PA6NIJ5 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A9PA6NNJ1 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A12PA8MX19 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A5PA8MXJ8 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 GABRPO00591 440 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 CD2P06729 351 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A15PP0C7V4 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A13PP0C7W8 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A14PP0C7W9 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 FAM90A24PP0C7X0 464 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 RAB7AP51149 207 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 ZSCAN26Q16670 478 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 KHDC1LQ5JSQ8 128 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 SATL1Q86VE3 508 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 Q8NFD4 153 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 OR10A7Q8NGE5 316 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 OR52I1Q8NGK6 324 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 OR13A1Q8NGR1 328 aa14.89□□□□□ -0.03
CLN3-218ENST00000565688 NPIPB11E5RHQ5 1161 aa14.88□□□□□ -0.03
CLN3-218ENST00000565688 CCDC58Q4VC31 144 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms