RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RBM11P57052 281 aaKnown RBP11.38□□□□□ -0.59
CLN3-210ENST00000563874 VAMP2P63027 116 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 DAZAP2Q15038 168 aaPredicted RBP11.38□□□□□ -0.59
CLN3-210ENST00000563874 ZNF674Q2M3X9 581 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 CLEC2AQ6UVW9 174 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 ZNF818PQ6ZRF7 136 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 MALSU1Q96EH3 234 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 IFITM10A6NMD0 228 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 H3BP45 60 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 TOX3O15405 576 aaPredicted RBP11.38□□□□□ -0.59
CLN3-210ENST00000563874 SCTP09683 121 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 RAB1AP62820 205 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 PDZD11Q5EBL8 140 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 MRPL14Q6P1L8 145 aaKnown RBP11.38□□□□□ -0.59
CLN3-210ENST00000563874 GAPTQ8N292 157 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 GPR137CQ8N3F9 429 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 Q8WTZ3 238 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 YPEL4Q96NS1 127 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 TOLLIPQ9H0E2 274 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 TMPRSS5Q9H3S3 457 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 TMEM38BQ9NVV0 291 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 PARPBPQ9NWS1 579 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 IL36RNQ9UBH0 155 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 PTRH2Q9Y3E5 179 aaKnown RBP11.38□□□□□ -0.59
CLN3-210ENST00000563874 PI4KAP42356 2102 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 A0A087WZY1 265 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 A0A0G2JMM0 328 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 A0A1W2PPB8 328 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 A0A1W2PRS3 328 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 KIR3DP1A8MWS1 328 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 HSD17B6O14756 317 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 FUT3P21217 361 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 DLK1P80370 383 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 ZNF154Q13106 437 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 CEACAM16Q2WEN9 425 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 C9orf152Q5JTZ5 239 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 ASCL4Q6XD76 172 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 DPPA2Q7Z7J5 298 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 IGKV1D-13A0A0B4J2D9 117 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 hCG_38984A0A1B0GV85 526 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 C3orf80F5H4A9 247 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 IGKV1-13P0DP09 117 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 CCNOP22674 350 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 CASP6P55212 293 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 UCP3P55916 312 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 STARD6P59095 220 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 HIKESHIQ53FT3 197 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 TMEM42Q69YG0 159 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 SLC23A3Q6PIS1 610 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 ZNF429Q86V71 674 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 ODF3L1Q8IXM7 274 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 EXTL1Q92935 676 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 C11orf1Q9H5F2 150 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 PLEKHF2Q9H8W4 249 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 TGIF2-C20orf24A0A0A6YYL0 155 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 PITX3O75364 302 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 CDS2O95674 445 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 SRP19P09132 144 aaKnown RBP11.37□□□□□ -0.59
CLN3-210ENST00000563874 FUT6P51993 359 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 ERVFRD-1P60508 538 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 RAB2AP61019 212 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 CFAP161Q6P656 301 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 ZNF100Q8IYN0 542 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 SELENOHQ8IZQ5 122 aaKnown RBP11.37□□□□□ -0.59
CLN3-210ENST00000563874 ZNF576Q9H609 170 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 LYRM2Q9NU23 88 aaPredicted RBP11.37□□□□□ -0.59
CLN3-210ENST00000563874 DOK5Q9P104 306 aa11.37□□□□□ -0.59
CLN3-210ENST00000563874 CEP192Q8TEP8 1941 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 OR6C6A6NF89 314 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CXCL13O43927 109 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 SSR4P51571 173 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 IZUMO4Q1ZYL8 232 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 PYY3Q5JQD4 70 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 C9orf135Q5VTT2 229 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 AAED1Q7RTV5 226 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CCDC54Q8NEL0 328 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 NEK7Q8TDX7 302 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CA5BP1Q8WTZ4 195 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 DNASE2BQ8WZ79 361 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 PCED1AQ9H1Q7 454 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 IGHV1-45A0A0A0MS14 117 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 LY6G6EA0A0G2JKS1 128 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 HSPA12AO43301 675 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CHST1O43916 411 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 UMODP07911 640 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CST2P09228 141 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CCL2P13500 99 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 RPS18P62269 152 aaKnown RBP11.36□□□□□ -0.59
CLN3-210ENST00000563874 ICAM4Q14773 271 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 TMEM211Q6ICI0 200 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CPNE4Q96A23 557 aaPredicted RBP11.36□□□□□ -0.59
CLN3-210ENST00000563874 FOXB1Q99853 325 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 OR2H1Q9GZK4 316 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 CCL28Q9NRJ3 127 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 WSB1Q9Y6I7 421 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 U3KQA8 63 aa11.36□□□□□ -0.59
CLN3-210ENST00000563874 BCL3P20749 454 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 CARD18P57730 90 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 ELOBQ15370 118 aa11.35□□□□□ -0.59
CLN3-210ENST00000563874 GFI1BQ5VTD9 330 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms