RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PRR14LQ5THK1 2151 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 A0A1W2PQD3 144 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 XKRY2A2RUG3 117 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 BLACEA4D250 179 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 MPPED1O15442 326 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 NRASP01111 189 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 PPYP01298 95 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 TLE4Q04727 773 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 PMS2P11Q13670 270 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 USF3Q68DE3 2245 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 HEATR1Q9H583 2144 aaKnown RBP9.82□□□□□ -0.84
LDLR-208ENST00000558518 GVINP1Q7Z2Y8 2422 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 TNFSF11O14788 317 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 SERPINE2P07093 398 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 ARL6IP1Q15041 203 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 ZNF468Q5VIY5 522 aaPredicted RBP9.82□□□□□ -0.84
LDLR-208ENST00000558518 OSR2Q8N2R0 312 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 GALNT14Q96FL9 552 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 ZNF845Q96IR2 970 aaPredicted RBP9.82□□□□□ -0.84
LDLR-208ENST00000558518 SMIM7Q9BQ49 75 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 SLC25A31Q9H0C2 315 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 PLEKHF2Q9H8W4 249 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 CBLN4Q9NTU7 201 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 WDFY4Q6ZS81 3184 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 IGKV1-27A0A075B6S5 117 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 A0A1W2PPC4 97 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 TIAF1O95411 115 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 TK1P04183 234 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 EGR1P18146 543 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 EN2P19622 333 aaPredicted RBP9.82□□□□□ -0.84
LDLR-208ENST00000558518 ZNF133P52736 654 aaPredicted RBP9.82□□□□□ -0.84
LDLR-208ENST00000558518 IL13RA2Q14627 380 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 ZNF124Q15973 351 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 SPINK9Q5DT21 86 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 SCRT1Q9BWW7 348 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 GPR87Q9BY21 358 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 PPP1R3CQ9UQK1 317 aa9.82□□□□□ -0.84
LDLR-208ENST00000558518 IGKV3D-11A0A0A0MRZ8 115 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 PROB1E7EW31 1015 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 HIKESHIQ53FT3 197 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 SPSB3Q6PJ21 355 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 ZNF705AQ6ZN79 300 aaPredicted RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 ZNF784Q8NCA9 323 aaPredicted RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 HLA-CQ95604 372 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 RBMXL1Q96E39 390 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 Q96M66 194 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 OXGR1Q96P68 337 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 MRPL13Q9BYD1 178 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 ZDBF2Q9HCK1 2354 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 A0A096LPE4 126 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 A0A1W2PPZ6 126 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 CLDN34H7C241 214 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 ST8SIA5O15466 376 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 PTBP3O95758 552 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 IGHMP01871 453 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 RPL29P47914 159 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 PKIAP61925 76 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 SRYQ05066 204 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 P2RY6Q15077 328 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 SHBQ15464 509 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 YRDCQ86U90 279 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 POC1BQ8TC44 478 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 MSI2Q96DH6 328 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 SDSLQ96GA7 329 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 ZNF488Q96MN9 340 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 HIST1H2BLQ99880 126 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 FUT9Q9Y231 359 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 CACNA1GO43497 2377 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 SLC31A2O15432 143 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 DHHO43323 396 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 DUX1O43812 170 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 TMEM50AO95807 157 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 CHRNA7P36544 502 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 PLPPR5Q32ZL2 321 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 SLC25A22Q9H936 323 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 MSL2Q9HCI7 577 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 RPRMQ9NS64 109 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 DKKL1Q9UK85 242 aa9.81□□□□□ -0.84
LDLR-208ENST00000558518 NOSIPQ9Y314 301 aaKnown RBP9.81□□□□□ -0.84
LDLR-208ENST00000558518 IGKV1-12A0A0C4DH73 117 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 IGKV1D-12P01611 117 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 TCN2P20062 427 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 DRD1P21728 446 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 PRSS8Q16651 343 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 SLC25A47Q6Q0C1 308 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 ZNF818PQ6ZRF7 136 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 REC114Q7Z4M0 266 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 PLXDC1Q8IUK5 500 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 FAM89BQ8N5H3 189 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 GTF3AQ92664 365 aaKnown RBP9.8□□□□□ -0.84
LDLR-208ENST00000558518 OR5B12Q96R08 314 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 ELOVL1Q9BW60 279 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 BCO1Q9HAY6 547 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 PNRC2Q9NPJ4 139 aaKnown RBP9.8□□□□□ -0.84
LDLR-208ENST00000558518 KIAA1456Q9P272 454 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 OR14J1Q9UGF5 321 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 A0A1B0GUS0 222 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 GLIPR1P48060 266 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 H3F3AP84243 136 aa9.8□□□□□ -0.84
LDLR-208ENST00000558518 RTL6Q6ICC9 239 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms