RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ADAM20O43506 726 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 TUSC2O75896 110 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 OR7C1O76099 320 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-231ENST00000557433 SSR4P51571 173 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 NDUFA6P56556 154 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 HLA-DRB3P79483 266 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 NRN1LQ496H8 165 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 STX12Q86Y82 276 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 H1FOOQ8IZA3 346 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-231ENST00000557433 EXTL1Q92935 676 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 SIGLEC12Q96PQ1 595 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 OR2H1Q9GZK4 316 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 RIMS4Q9H426 269 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-231ENST00000557433 GLRX2Q9NS18 164 aa14.02□□□□□ -0.16
SHMT2-231ENST00000557433 MYO7BQ6PIF6 2116 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 IGHV5-10-1A0A0J9YXX1 117 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 LOC102723971A0A1B0GUV8 181 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 ZNF587BE7ETH6 402 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 YIF1AO95070 293 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 WNT2P09544 360 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 RPL23AP62750 156 aaKnown RBP14.02□□□□□ -0.17
SHMT2-231ENST00000557433 RNPS1Q15287 305 aaKnown RBP14.02□□□□□ -0.17
SHMT2-231ENST00000557433 HAGHQ16775 308 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 TRIM61Q5EBN2 209 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 SPIN3Q5JUX0 258 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 CYB561D1Q8N8Q1 229 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 GTF3AQ92664 365 aaKnown RBP14.02□□□□□ -0.17
SHMT2-231ENST00000557433 ZNF837Q96EG3 531 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-231ENST00000557433 PRDM14Q9GZV8 571 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 CRLF2Q9HC73 371 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 MMP24Q9Y5R2 645 aa14.02□□□□□ -0.17
SHMT2-231ENST00000557433 IGHV1-45A0A0A0MS14 117 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 TNFSF11O14788 317 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 PPP1R2P9O14990 202 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 NAPSAO96009 420 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 IFNA5P01569 189 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 CCL3P10147 92 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 NPBWR2P48146 333 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 ASCL1P50553 236 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 RND2P52198 227 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 NKX6-1P78426 367 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-231ENST00000557433 PSG4Q00888 419 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 MPV17LQ2QL34 196 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 PYY3Q5JQD4 70 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 BRICD5Q6PL45 260 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 Q6ZPA2 131 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 ZNF611Q8N823 705 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 IMMP1LQ96LU5 166 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 RAB40CQ96S21 281 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 ABHD14AQ9BUJ0 271 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 BCL2L14Q9BZR8 327 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 WNT5BQ9H1J7 359 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 PROK2Q9HC23 129 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 SPAG17Q6Q759 2223 aa14.01□□□□□ -0.17
SHMT2-231ENST00000557433 MED19A0JLT2 244 aaPredicted RBP14□□□□□ -0.17
SHMT2-231ENST00000557433 LRP5LA4QPB2 252 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 IFITM10A6NMD0 228 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 H0YL77 283 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 OMGP23515 440 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 ZNF92Q03936 586 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 CXorf66Q5JRM2 361 aaPredicted RBP14□□□□□ -0.17
SHMT2-231ENST00000557433 AAED1Q7RTV5 226 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 C1orf87Q8N0U7 546 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 SUMF1Q8NBK3 374 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 PIGCQ92535 297 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 PFDN5Q99471 154 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 FOXB1Q99853 325 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 C1QTNF5Q9BXJ0 243 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 SRXN1Q9BYN0 137 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 CISD1Q9NZ45 108 aaKnown RBP14□□□□□ -0.17
SHMT2-231ENST00000557433 ASXL3Q9C0F0 2248 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 MYO9BQ13459 2157 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 A0A1B0GU03 582 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 ZNF727A8MUV8 499 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 PTBP3O95758 552 aaKnown RBP14□□□□□ -0.17
SHMT2-231ENST00000557433 FGF5P12034 268 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 SRD5A2P31213 254 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 FGF12P61328 243 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 PLPPR1Q8TBJ4 325 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 CCDC74BQ96LY2 380 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 P2RX4Q99571 388 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 GFOD1Q9NXC2 390 aa14□□□□□ -0.17
SHMT2-231ENST00000557433 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 SLC22A20A6NK97 555 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 CCDC85CA6NKD9 419 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 CHST1O43916 411 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H2BKO60814 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H2BJP06899 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 CXCL1P09341 107 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H1BP16401 226 aaKnown RBP13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H2BOP23527 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H2BBP33778 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H2BDP58876 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST1H2BCP62807 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST2H2BEQ16778 126 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-231ENST00000557433 ZNF818PQ6ZRF7 136 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 SLC25A26Q70HW3 274 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 LINC00596Q86U02 117 aa13.99□□□□□ -0.17
SHMT2-231ENST00000557433 ODF3L1Q8IXM7 274 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms