RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	OPN1MW3	P0DN78	364 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DSCR4	P56555	118 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	FAM3A	P98173	230 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	IL24	Q13007	206 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ABHD17B	Q5VST6	288 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPNS3	Q6ZMD2	512 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	VN1R17P	Q8TDU5	208 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC25A43	Q8WUT9	341 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	KCNE4	Q8WWG9	221 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	RSG1	Q9BU20	258 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	RNF126	Q9BV68	326 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	MANBAL	Q9NQG1	85 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	GNG12	Q9UBI6	72 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		A0A1B0GTI1	187 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SHISA7	A6NL88	538 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		B4DEV8	164 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	MS4A18	H0YCH9	400 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	ATXN7	O15265	892 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PAGE4	O60829	102 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	IL2RA	P01589	272 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGHM	P01871	453 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	HOXC4	P09017	264 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	DUSP3	P51452	185 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CCR5	P51681	352 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SUMO3	P55854	103 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	EXT1	Q16394	746 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	MS4A18	Q3C1V0	323 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SNAI3	Q3KNW1	292 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	VAX1	Q5SQQ9	334 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	TECTB	Q96PL2	329 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	GPX7	Q96SL4	187 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	CISD1	Q9NZ45	108 aa	Known RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	C2CD4D	B7Z1M9	353 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPINT2	O43291	252 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PGA3	P0DJD8	388 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PRF1	P14222	555 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	EN2	P19622	333 aa	Predicted RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	COL19A1	Q14993	1142 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		Q8WTZ3	238 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PP6455	Q8WZ26	134 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PTX4	Q96A99	478 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PINX1	Q96BK5	328 aa	Known RBP	4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	TBX15	Q96SF7	602 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	WDR13	Q9H1Z4	485 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	VAX2	Q9UIW0	290 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	SH3BGRL2	Q9UJC5	107 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005	PAM16	Q9Y3D7	125 aa		4.36	□□□□□ -1.71
SYNE2-223	ENST00000557005		A0A0A6YYD4	124 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TRAV39	A0A0B4J263	110 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF735	P0CB33	412 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF32	P17041	273 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	CDC34	P49427	236 aa	Predicted RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	RND3	P61587	244 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	GAMT	Q14353	236 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ISX	Q2M1V0	245 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	CEACAM16	Q2WEN9	425 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPATA45	Q537H7	98 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	KHDC3L	Q587J8	217 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ANKRD12	Q6UB98	2062 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	APH1A	Q96BI3	265 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF488	Q96MN9	340 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	GNRHR2	Q96P88	292 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	FOXB1	Q99853	325 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	GINS3	Q9BRX5	216 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	CLN8	Q9UBY8	286 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	PITPNC1	Q9UKF7	332 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	MMP17	Q9ULZ9	603 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGKV1D-43	A0A0B4J1Z2	117 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	RPL36A-HNRNPH2	H7BZ11	118 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	KRAS	P01116	189 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	PPY	P01298	95 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGHV3-13	P01766	116 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGHV3-7	P01780	117 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ISG15	P05161	165 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ARR3	P36575	388 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TCL1A	P56279	114 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF92	Q03936	586 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	BSX	Q3C1V8	233 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	AARD	Q4LEZ3	155 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM164	Q5U3C3	297 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	MENT	Q9BUN1	341 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	DUSP23	Q9BVJ7	150 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ANGPTL4	Q9BY76	406 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TWSG1	Q9GZX9	223 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TBX21	Q9UL17	535 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	FRMPD3	Q5JV73	1810 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005		A0A1W2PPE3	182 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TGFBR3L	H3BV60	316 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	SRSF10	O75494	262 aa	Known RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF708	P17019	499 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	USF1	P22415	310 aa	Predicted RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	SRP14	P37108	136 aa	Known RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	GLIPR1	P48060	266 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	TCTA	P57738	103 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	FAM3B	P58499	235 aa	Predicted RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF658B	Q4V348	819 aa	Predicted RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	CDCP2	Q5VXM1	449 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF573	Q86YE8	665 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	RAB40C	Q96S21	281 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005		A0A1W2PPC4	97 aa		4.35	□□□□□ -1.71

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