RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 GLI4P10075 376 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 GPM6AP51674 278 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 SPIN3Q5JUX0 258 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 HSD17B11Q8NBQ5 300 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 CDX2Q99626 313 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-222ENST00000555774 EIF5A2Q9GZV4 153 aaKnown RBP11.57□□□□□ -0.56
SHMT2-222ENST00000555774 SH3BGRL3Q9H299 93 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 COL27A1Q8IZC6 1860 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-222ENST00000555774 BTBD17A6NE02 478 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF732B4DXR9 585 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 H0Y980 276 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 HSPA12AO43301 675 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 VDAC1P21796 283 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 VAMP2P63027 116 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 RHEBQ15382 184 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 NMSQ5H8A3 153 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 ABHD17BQ5VST6 288 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 DBX2Q6ZNG2 339 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF818PQ6ZRF7 136 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 TUSC5Q8IXB3 177 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 CMTM1Q8IZ96 169 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 GAPTQ8N292 157 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 OR5D13Q8NGL4 314 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 PARP12Q9H0J9 701 aaKnown RBP11.57□□□□□ -0.56
SHMT2-222ENST00000555774 SLC35B3Q9H1N7 401 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 RPS10P5Q9NQ39 176 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 MTCH1Q9NZJ7 389 aa11.57□□□□□ -0.56
SHMT2-222ENST00000555774 NCKAP5O14513 1909 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 FAM24AA6NFZ4 105 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF98A6NK75 572 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 PDGFBP01127 241 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-222ENST00000555774 HLA-HP01893 362 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 MT-ND4LP03901 98 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 WNT2P09544 360 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 SCTP09683 121 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 CCNOP22674 350 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 S100GP29377 79 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 AWAT1Q58HT5 328 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 SHEQ5VZ18 495 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 TMEM182Q6ZP80 229 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-222ENST00000555774 APH1AQ96BI3 265 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 C14orf79Q96F83 325 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 MPC1Q9Y5U8 109 aa11.56□□□□□ -0.56
SHMT2-222ENST00000555774 A0A096LPE4 126 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 A0A1W2PPZ6 126 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 IGSF23A1L1A6 192 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 OR5B21A6NL26 309 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 PTAFRP25105 342 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 AKR1D1P51857 326 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 ID3Q02535 119 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 PLP2Q04941 152 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 HERPUD1Q15011 391 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 RNPS1Q15287 305 aaKnown RBP11.55□□□□□ -0.56
SHMT2-222ENST00000555774 C1orf210Q8IVY1 113 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 TMEM252Q8N6L7 170 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 HIST1H2BAQ96A08 127 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 GNPNAT1Q96EK6 184 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-222ENST00000555774 POM121L2Q96KW2 1035 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 GPR87Q9BY21 358 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 CALHM2Q9HA72 323 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 KCNJ16Q9NPI9 418 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 PRDM6Q9NQX0 595 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 PCSK5Q92824 1860 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 C7orf77A4D0Y5 90 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 C1orf196B1AJZ1 125 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 C21orf140B9A014 251 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 ADAM20O43506 726 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 SLC25A6P12236 298 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF44P15621 663 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 RPL35P42766 123 aaKnown RBP11.55□□□□□ -0.56
SHMT2-222ENST00000555774 POLR2GP62487 172 aaKnown RBP eCLIP11.55□□□□□ -0.56
SHMT2-222ENST00000555774 RAB1AP62820 205 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 SRYQ05066 204 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 OR8G1Q15617 311 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF573Q86YE8 665 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 LILRB1Q8NHL6 650 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-222ENST00000555774 FAM213BQ8TBF2 198 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 NEK7Q8TDX7 302 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 OR5P3Q8WZ94 311 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 CLCC1Q96S66 551 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 ESRP2Q9H6T0 727 aaKnown RBP11.55□□□□□ -0.56
SHMT2-222ENST00000555774 IFT22Q9H7X7 185 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 COA4Q9NYJ1 87 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 VCANP13611 3396 aa11.55□□□□□ -0.56
SHMT2-222ENST00000555774 LRP5LA4QPB2 252 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 ANKRD30BLA7E2S9 258 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 CD300LBA8K4G0 201 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 SLC34A2O95436 690 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 JMJD7P0C870 316 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 ATP6V0CP27449 155 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 FHITP49789 147 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF880Q6PDB4 577 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 OR1J1Q8NGS3 322 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 MRPL30Q8TCC3 161 aaKnown RBP11.54□□□□□ -0.56
SHMT2-222ENST00000555774 SIGLEC12Q96PQ1 595 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 TTTY12Q9BZ98 90 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 PRRG4Q9BZD6 226 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 PKIBQ9C010 78 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 CRIM1Q9NZV1 1036 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 LHX6Q9UPM6 363 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms