RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 HIST1H2BCP62807 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 DLK1P80370 383 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF92Q03936 586 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CNN3Q15417 329 aaKnown RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST2H2BEQ16778 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 PDZD11Q5EBL8 140 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 FAM27BQ5VT28 67 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM42Q69YG0 159 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SELENOHQ8IZQ5 122 aaKnown RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 OSR2Q8N2R0 312 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM217Q8N7C4 229 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF383Q8NA42 475 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 PLPPR1Q8TBJ4 325 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 NAT6Q93015 286 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BHQ93079 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 BORCS8Q96FH0 119 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SIGLEC12Q96PQ1 595 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BNQ99877 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BMQ99879 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 DEFB126Q9BYW3 111 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ULBP2Q9BZM5 246 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM222Q9H0R3 208 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CALHM2Q9HA72 323 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 BCO1Q9HAY6 547 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF286AQ9HBT8 521 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SLC7A10Q9NS82 523 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 PARPBPQ9NWS1 579 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TREM2Q9NZC2 230 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 KIAA1456Q9P272 454 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TCFL5Q9UL49 500 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SLC7A11Q9UPY5 501 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 NOSIPQ9Y314 301 aaKnown RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 IGKV1D-13A0A0B4J2D9 117 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 A0A1W2PQM1 296 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 TNFSF11O14788 317 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 HSPA12AO43301 675 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ADAM20O43506 726 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 PDCD6O75340 191 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 PITX3O75364 302 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 SCAF4O95104 1147 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 NRASP01111 189 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 TRGC2P03986 189 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 IGKV1-13P0DP09 117 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 B4GALT1P15291 398 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF32P17041 273 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 GPX4P36969 197 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 UBE2KP61086 200 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 SRPXP78539 464 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF674Q2M3X9 581 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 UNQ6494/PRO21346Q6UXR6 183 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF818PQ6ZRF7 136 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 LHFPL2Q6ZUX7 228 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 P4HA3Q7Z4N8 544 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 TBC1D26Q86UD7 250 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF429Q86V71 674 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 INTS12Q96CB8 462 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 GPR61Q9BZJ8 451 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 SLC25A31Q9H0C2 315 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF700Q9H0M5 742 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 HIPK2Q9H2X6 1198 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 PRDM13Q9H4Q3 707 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 PLEKHF2Q9H8W4 249 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 GAR1Q9NY12 217 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 CRIM1Q9NZV1 1036 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 PTRH2Q9Y3E5 179 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 A0A087WZY1 265 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 A0A0G2JRQ6 117 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF732B4DXR9 585 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 HSPB1P04792 205 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 SCTP09683 121 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 S100A2P29034 98 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 HAAOP46952 286 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 PAX9P55771 341 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 RBM11P57052 281 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 HERV-K104P61576 105 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 MRPS34P82930 218 aaKnown RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF154Q13106 437 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 HERPUD1Q15011 391 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 OR8B8Q15620 311 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 EXT1Q16394 746 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 IZUMO4Q1ZYL8 232 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 TRIM61Q5EBN2 209 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 NMSQ5H8A3 153 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 RAET1LQ5VY80 246 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM211Q6ICI0 200 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 GUSBP11Q6P575 273 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF100Q8IYN0 542 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 MAML2Q8IZL2 1156 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 FAM185AQ8N0U4 392 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF295-AS1Q8N0V1 137 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF610Q8N9Z0 462 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 CADM4Q8NFZ8 388 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 OR10D4PQ8NGN7 298 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 OR1F12Q8NHA8 337 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 CLDND2Q8NHS1 167 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ABHD5Q8WTS1 349 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 GNPNAT1Q96EK6 184 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-212ENST00000552491 ABHD14BQ96IU4 210 aa4.66□□□□□ -1.66
LIMA1-212ENST00000552491 RHOVQ96L33 236 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms