RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 GNG8Q9UK08 70 aa10.22□□□□□ -0.77
PTCH1-218ENST00000548945 GSTK1Q9Y2Q3 226 aa10.22□□□□□ -0.77
PTCH1-218ENST00000548945 MOB4Q9Y3A3 225 aa10.22□□□□□ -0.77
PTCH1-218ENST00000548945 HSPE1-MOB4S4R3N1 261 aa10.22□□□□□ -0.77
PTCH1-218ENST00000548945 IGKV1-12A0A0C4DH73 117 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 PSMB11A5LHX3 300 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A18PA6NE21 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A16PA6NEW6 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A20PA6NIJ5 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 ZNF729A6NN14 1252 aaPredicted RBP10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A9PA6NNJ1 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A12PA8MX19 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A5PA8MXJ8 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 APOL3O95236 402 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 IGKV1D-12P01611 117 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A15PP0C7V4 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A13PP0C7W8 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A14PP0C7W9 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM90A24PP0C7X0 464 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FAM106CPP0CH98 169 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 POLR2IP36954 125 aaKnown RBP10.21□□□□□ -0.77
PTCH1-218ENST00000548945 CCR9P51686 369 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 SNU13P55769 128 aaKnown RBP10.21□□□□□ -0.77
PTCH1-218ENST00000548945 ZNF85Q03923 595 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 DEFB121Q5J5C9 76 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 KHDC1LQ5JSQ8 128 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 FGGYQ96C11 551 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 B9D2Q9BPU9 175 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 MCRIP2Q9BUT9 160 aaKnown RBP10.21□□□□□ -0.77
PTCH1-218ENST00000548945 NCOR1P1Q9H4R4 102 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 NEK6Q9HC98 313 aa10.21□□□□□ -0.77
PTCH1-218ENST00000548945 ZMAT5Q9UDW3 170 aaKnown RBP10.21□□□□□ -0.77
PTCH1-218ENST00000548945 AMMECR1Q9Y4X0 333 aaPredicted RBP10.21□□□□□ -0.77
PTCH1-218ENST00000548945 KBTBD11-OT1A0A1B0GTJ5 212 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 SLC33A1O00400 549 aaPredicted RBP10.2□□□□□ -0.78
PTCH1-218ENST00000548945 RPSAP08865 295 aaKnown RBP10.2□□□□□ -0.78
PTCH1-218ENST00000548945 OCM2P0CE71 109 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 OCMP0CE72 109 aaPredicted RBP10.2□□□□□ -0.78
PTCH1-218ENST00000548945 CALCBP10092 127 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 ZNF44P15621 663 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 GDNFP39905 211 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 TP53I3Q53FA7 332 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 KRBOX4Q5JUW0 171 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 C11orf87Q6NUJ2 197 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 Q6P435 159 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 C10orf99Q6UWK7 81 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 MRPL41Q8IXM3 137 aaKnown RBP10.2□□□□□ -0.78
PTCH1-218ENST00000548945 OR9G1Q8NH87 305 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 CHPT1Q8WUD6 406 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 TRUB1Q8WWH5 349 aaKnown RBP10.2□□□□□ -0.78
PTCH1-218ENST00000548945 COQ2Q96H96 371 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 LINC00574Q9H8X3 128 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 ZFP57Q9NU63 452 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 FRRS1LQ9P0K9 344 aa10.2□□□□□ -0.78
PTCH1-218ENST00000548945 FAM172BPA6NC97 362 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 FGF16O43320 207 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 TNFAIP8O95379 198 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 CGB3P0DN86 165 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 CGB7P0DN87 165 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 OR3A4PP47883 348 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 THBS3P49746 956 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 RPL23AP62750 156 aaKnown RBP10.19□□□□□ -0.78
PTCH1-218ENST00000548945 PAX5Q02548 391 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 CD69Q07108 199 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 RBM39Q14498 530 aaKnown RBP10.19□□□□□ -0.78
PTCH1-218ENST00000548945 C17orf58Q2M2W7 97 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 C9orf152Q5JTZ5 239 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 ETV3LQ6ZN32 361 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 COMMD1Q8N668 190 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 ZNF565Q8N9K5 539 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 OR51T1Q8NGJ9 327 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 TOMM40LQ969M1 308 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 RFT1Q96AA3 541 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 RPEQ96AT9 228 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 KIRREL1Q96J84 757 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 WWC2-AS2Q96NR7 200 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 IMPAD1Q9NX62 359 aa10.19□□□□□ -0.78
PTCH1-218ENST00000548945 RYR3Q15413 4870 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 MAGEA13PA6NCF6 341 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 SH2D7A6NKC9 451 aaPredicted RBP10.18□□□□□ -0.78
PTCH1-218ENST00000548945 J3QR06 171 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 J3QRE1 110 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 DEGS1O15121 323 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 MPZL2O60487 215 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 HTR1AP08908 422 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 DBTP11182 482 aaKnown RBP10.18□□□□□ -0.78
PTCH1-218ENST00000548945 HOXD3P31249 432 aaPredicted RBP10.18□□□□□ -0.78
PTCH1-218ENST00000548945 MYCNOSP40205 109 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 NANOS3P60323 173 aaKnown RBP10.18□□□□□ -0.78
PTCH1-218ENST00000548945 SCN1BQ07699 218 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 CDK5R1Q15078 307 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 SLC25A30Q5SVS4 291 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 SLC16A12Q6ZSM3 486 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 OR2W3Q7Z3T1 314 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 OR8H3Q8N146 312 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 OR13C3Q8NGS6 347 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 OR13C9Q8NGT0 318 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 FBLIM1Q8WUP2 373 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 SPACA5Q96QH8 159 aa10.18□□□□□ -0.78
PTCH1-218ENST00000548945 MYCBPQ99417 103 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms