RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 EFNB1P98172 346 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 IFFO1Q0D2I5 559 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 RBM39Q14498 530 aaKnown RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 KLHL12Q53G59 568 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ASPHD1Q5U4P2 390 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 SLX4IPQ5VYV7 408 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 TMEM268Q5VZI3 342 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 MZT2BQ6NZ67 158 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 HEPN1Q6WQI6 88 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 FAM57BQ71RH2 274 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 KRT74Q7RTS7 529 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 PRSS45Q7RTY3 260 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 TRAPPC6BQ86SZ2 158 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF573Q86YE8 665 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 TGIF2LXQ8IUE1 241 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 OR8H3Q8N146 312 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 PROKR2Q8NFJ6 384 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 OR8H1Q8NGG4 311 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 OR2T4Q8NH00 348 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 OR56B4Q8NH76 319 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 FAM81AQ8TBF8 368 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ARPC1AQ92747 370 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 DLX4Q92988 240 aaPredicted RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 TMEM106AQ96A25 262 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 FLYWCH2Q96CP2 140 aaKnown RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 SLAMF6Q96DU3 332 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 PGAM5Q96HS1 289 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ERMAPQ96PL5 475 aaPredicted RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 NMNAT3Q96T66 252 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 CGREF1Q99674 301 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 SH3GL1Q99961 368 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 RASL11BQ9BPW5 248 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 FAM110AQ9BQ89 295 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ROPN1BQ9BZX4 212 aaPredicted RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ANKRD19PQ9H560 264 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 PPP1R3EQ9H7J1 279 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 KAT8Q9H7Z6 458 aaKnown RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ROPN1Q9HAT0 212 aaPredicted RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 PLEKHA1Q9HB21 404 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 RETNQ9HD89 108 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 KRT84Q9NSB2 600 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 MRPL22Q9NWU5 206 aaKnown RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 CCDC167Q9P0B6 97 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 RHCGQ9UBD6 479 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 MRM2Q9UI43 246 aaKnown RBP3.12□□□□□ -1.91
SNHG1-220ENST00000544550 ENPP5Q9UJA9 477 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 DHDHQ9UQ10 334 aa3.12□□□□□ -1.91
SNHG1-220ENST00000544550 TRGV10A0A0A0MS01 117 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 TRBV5-7A0A0A0MS05 114 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 FUOMA2VDF0 154 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 DPPA5A6NC42 116 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 PGPEP1LA6NFU8 196 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 FAM183AA6NL82 134 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 NCBP2LA6PVI3 153 aaKnown RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 LY6LH3BQJ8 138 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 IDH3BO43837 385 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF737O75373 536 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 BRI3O95415 125 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 IGKV1D-33P01593 117 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 IGKV1-33P01594 117 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 IGF1P05019 195 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 SPARCP09486 303 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ATP6V1B1P15313 513 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 HIST1H1CP16403 213 aaKnown RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ANOS1P23352 680 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 CDK2P24941 298 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ACKR3P25106 362 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 FASP25445 335 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ERP29P30040 261 aaKnown RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 RPS27P42677 84 aaKnown RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 HAAOP46952 286 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 BLVRAP53004 296 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 CRYBA2P53672 197 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 MTPNP58546 118 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 GNB1P62873 340 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 MADCAM1Q13477 382 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 EBI3Q14213 229 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 EDDM3AQ14507 147 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 GRK1Q15835 563 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 TEX30Q5JUR7 227 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 LCN12Q6JVE5 192 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ERICH5Q6P6B1 374 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 DLEU7Q6UYE1 221 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 TCF23Q7RTU1 214 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 CYP4Z1Q86W10 505 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 FUNDC1Q8IVP5 155 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF491Q8N8L2 437 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 OR4D6Q8NGJ1 314 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 OR4K13Q8NH42 304 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 OR10A6Q8NH74 314 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 OR9G1Q8NH87 305 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 FANK1Q8TC84 345 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.11□□□□□ -1.916e-13■■□□□ 14.1
SNHG1-220ENST00000544550 RGP1Q92546 391 aaPredicted RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 RSRC1Q96IZ7 334 aaKnown RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 KCTD7Q96MP8 289 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 OR52B2Q96RD2 323 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 IFT27Q9BW83 186 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 FGF23Q9GZV9 251 aaPredicted RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 GNB4Q9HAV0 340 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms