RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ZNF818PQ6ZRF7 136 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 NUFIP2Q7Z417 695 aaKnown RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 A0A087WZY1 265 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF816-ZNF321PA0A0X1KG74 233 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ETV2O00321 342 aaPredicted RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 FAM189A2Q15884 450 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF239Q16600 458 aaKnown RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 GUK1Q16774 197 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 AWAT1Q58HT5 328 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 RBMS3Q6XE24 437 aaKnown RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 EIF4E3Q8N5X7 224 aaKnown RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 TPRX1Q8N7U7 411 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 CPT1CQ8TCG5 803 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 WDR54Q9H977 334 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 UFSP2Q9NUQ7 469 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 COL4A2P08572 1712 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 C3orf85A0A1B0GTC6 90 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 RAB19A4D1S5 217 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 TRAPPC2LH3BP13 241 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 SNAPC5O75971 98 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 TK1P04183 234 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 BMP5P22003 454 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 OR1C1Q15619 314 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 PDZD11Q5EBL8 140 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 C20orf204Q6ZNR8 217 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 OR5C1Q8NGR4 320 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 SSC4DQ8WTU2 575 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 SFT2D1Q8WV19 159 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 PSMF1Q92530 271 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 SPSB1Q96BD6 273 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 ERRFI1Q9UJM3 462 aaPredicted RBP11.65□□□□□ -0.54
PTPN1-202ENST00000541713 ZDHHC8Q9ULC8 765 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 PLCE1Q9P212 2302 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 NKX2-1P43699 371 aaPredicted RBP11.65□□□□□ -0.54
PTPN1-202ENST00000541713 IDH3GP51553 393 aaPredicted RBP11.65□□□□□ -0.54
PTPN1-202ENST00000541713 FUT6P51993 359 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 LHFPL2Q6ZUX7 228 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 M1APQ8TC57 530 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 SYT3Q9BQG1 590 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 MTCH1Q9NZJ7 389 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 SPENQ96T58 3664 aaKnown RBP11.65□□□□□ -0.54
PTPN1-202ENST00000541713 ARFGEF3Q5TH69 2177 aa11.65□□□□□ -0.54
PTPN1-202ENST00000541713 BORCS7-ASMTA0A0B4J1R7 106 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 UMAD1C9J7I0 102 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 SOX15O60248 233 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 SYNGR4O95473 234 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 ZNF14P17017 642 aaPredicted RBP11.65□□□□□ -0.55
PTPN1-202ENST00000541713 RBM11P57052 281 aaKnown RBP11.65□□□□□ -0.55
PTPN1-202ENST00000541713 LIAT1Q6ZQX7 453 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 LGI3Q8N145 548 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 FGF23Q9GZV9 251 aaPredicted RBP11.65□□□□□ -0.55
PTPN1-202ENST00000541713 FANCFQ9NPI8 374 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 GHRLQ9UBU3 117 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 FBLN5Q9UBX5 448 aa11.65□□□□□ -0.55
PTPN1-202ENST00000541713 LOC102723996A0A087X1L8 192 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 hCG_38984A0A1B0GV85 526 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 LOC102725191A0A1B0GVB3 256 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 RBMXL2O75526 392 aaKnown RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 JTBO76095 146 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 CELA3BP08861 270 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 MDKP21741 143 aaPredicted RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 FGF8P55075 233 aaPredicted RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 SRSF4Q08170 494 aaKnown RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 ALKBH6Q3KRA9 238 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 FAM212BQ9NTI7 297 aaPredicted RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 ZFP57Q9NU63 452 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 EDARQ9UNE0 448 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 LIPGQ9Y5X9 500 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 MED13LQ71F56 2210 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 EXPH5Q8NEV8 1989 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 OR6C6A6NF89 314 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 MPPED1O15442 326 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 OTX1P32242 354 aaPredicted RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 DUSP3P51452 185 aaPredicted RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 LINC00205P59089 165 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 SRSF6Q13247 344 aaKnown RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 HFEQ30201 348 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 DPPA2Q7Z7J5 298 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 C1orf210Q8IVY1 113 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 MKXQ8IYA7 352 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 ZNF808Q8N4W9 903 aaPredicted RBP11.64□□□□□ -0.55
PTPN1-202ENST00000541713 TM2D1Q9BX74 207 aa11.64□□□□□ -0.55
PTPN1-202ENST00000541713 A0A1W2PPE3 182 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 FOXI3A8MTJ6 420 aaPredicted RBP11.63□□□□□ -0.55
PTPN1-202ENST00000541713 TUSC2O75896 110 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 LYZL6O75951 148 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 CER1O95813 267 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 CST2P09228 141 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 AVPI1Q5T686 147 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 OR5T1Q8NG75 326 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 NANPQ8TBE9 248 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 KCNJ16Q9NPI9 418 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 OR1A1Q9P1Q5 309 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 E5RGE8 158 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 CHST1O43916 411 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 LCN15Q6UWW0 184 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 CNEP1R1Q8N9A8 125 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 RNF138Q8WVD3 245 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 ASB13Q8WXK3 278 aa11.63□□□□□ -0.55
PTPN1-202ENST00000541713 FAM234AQ9H0X4 552 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms