RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZDHHC23Q8IYP9 409 aa14.48□□□□□ -0.09
USP28-208ENST00000540438 OR2J1Q9GZK6 312 aa14.48□□□□□ -0.09
USP28-208ENST00000540438 SVEP1Q4LDE5 3571 aa14.48□□□□□ -0.09
USP28-208ENST00000540438 IL18BPO95998 194 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 WT1P19544 449 aaPredicted RBP14.47□□□□□ -0.09
USP28-208ENST00000540438 PPA1Q15181 289 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 ZNF826PQ6ZT77 177 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 TBC1D26Q86UD7 250 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 TPRX1Q8N7U7 411 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 HIST1H2AAQ96QV6 131 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 REPIN1Q9BWE0 567 aaKnown RBP14.47□□□□□ -0.09
USP28-208ENST00000540438 RHOFQ9HBH0 211 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 ZNF175Q9Y473 711 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 IGKV1-6A0A0C4DH72 117 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 CEACAM18A8MTB9 384 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 H0YL77 283 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 TRIM77I1YAP6 450 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 SSSCA1O60232 199 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 CNOT4O95628 575 aaKnown RBP14.47□□□□□ -0.09
USP28-208ENST00000540438 IGHV3-13P01766 116 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 IGHV3-7P01780 117 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 PRH1P02810 166 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 FAM189A2Q15884 450 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 RIPPLY2Q5TAB7 128 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 TFAP2EQ6VUC0 442 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 C2CD4CQ8TF44 421 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 KIRREL1Q96J84 757 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 UFSP2Q9NUQ7 469 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 LRBAP50851 2863 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 SOX8P57073 446 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 PLP2Q04941 152 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 IL15RAQ13261 267 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 SLC30A7Q8NEW0 376 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 OR1A1Q9P1Q5 309 aa14.47□□□□□ -0.09
USP28-208ENST00000540438 ARPC4-TTLL3A0A0A6YYG9 625 aa14.46□□□□□ -0.09
USP28-208ENST00000540438 DEDDO75618 318 aa14.46□□□□□ -0.09
USP28-208ENST00000540438 TAGLNQ01995 201 aaKnown RBP14.46□□□□□ -0.09
USP28-208ENST00000540438 AKR1E2Q96JD6 320 aa14.46□□□□□ -0.09
USP28-208ENST00000540438 SAV1Q9H4B6 383 aaPredicted RBP14.46□□□□□ -0.09
USP28-208ENST00000540438 ABI3Q9P2A4 366 aa14.46□□□□□ -0.09
USP28-208ENST00000540438 RNF150Q9ULK6 438 aa14.46□□□□□ -0.09
USP28-208ENST00000540438 RBM7Q9Y580 266 aaKnown RBP14.46□□□□□ -0.09
USP28-208ENST00000540438 CDRT15L2A8MXV6 281 aa14.46□□□□□ -0.1
USP28-208ENST00000540438 CDIPTO14735 213 aa14.46□□□□□ -0.1
USP28-208ENST00000540438 ATG12O94817 140 aa14.46□□□□□ -0.1
USP28-208ENST00000540438 LPAR3Q9UBY5 353 aa14.46□□□□□ -0.1
USP28-208ENST00000540438 MEMO1Q9Y316 297 aa14.46□□□□□ -0.1
USP28-208ENST00000540438 TRBV6-7A0A0A0MS04 114 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 ADAM20O43506 726 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 LINC00205P59089 165 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 ZNF565Q8N9K5 539 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 ARL11Q969Q4 196 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 POM121L2Q96KW2 1035 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 PPP1R3CQ9UQK1 317 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 CSMD1Q96PZ7 3565 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 TERTO14746 1132 aaKnown RBP14.45□□□□□ -0.1
USP28-208ENST00000540438 CYC1P08574 325 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 APLNRP35414 380 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 RUNX1Q01196 453 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 LTC4SQ16873 150 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 ZNF766Q5HY98 468 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 DHRS11Q6UWP2 260 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 TMEM182Q6ZP80 229 aaPredicted RBP14.45□□□□□ -0.1
USP28-208ENST00000540438 MKXQ8IYA7 352 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 SUMF2Q8NBJ7 301 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 MSI2Q96DH6 328 aaKnown RBP14.45□□□□□ -0.1
USP28-208ENST00000540438 AQP10Q96PS8 301 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 TRIB1Q96RU8 372 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 USB1Q9BQ65 265 aaKnown RBP14.45□□□□□ -0.1
USP28-208ENST00000540438 PIGMQ9H3S5 423 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 ARFGEF3Q5TH69 2177 aa14.45□□□□□ -0.1
USP28-208ENST00000540438 TLN1Q9Y490 2541 aaKnown RBP14.44□□□□□ -0.1
USP28-208ENST00000540438 C3orf85A0A1B0GTC6 90 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 WNT9BO14905 357 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 GPR37O15354 613 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 DNPH1O43598 174 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 ADAMTS17Q8TE56 1095 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 MED9Q9NWA0 146 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 ERRFI1Q9UJM3 462 aaPredicted RBP14.44□□□□□ -0.1
USP28-208ENST00000540438 ATRXP46100 2492 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 PQLC2LA1A4F0 135 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 SLC22A20A6NK97 555 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 TRIP6Q15654 476 aaKnown RBP14.44□□□□□ -0.1
USP28-208ENST00000540438 LIAT1Q6ZQX7 453 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 ZNF695Q8IW36 515 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 FDCSPQ8NFU4 85 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 TRGV5A0A0B4J1U4 118 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 MPPED1O15442 326 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 DBX2Q6ZNG2 339 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 UQCC1Q9NVA1 299 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 TINAGQ9UJW2 476 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 HSF4Q9ULV5 492 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 FBXO7Q9Y3I1 522 aa14.44□□□□□ -0.1
USP28-208ENST00000540438 ASH1LQ9NR48 2969 aaKnown RBP14.43□□□□□ -0.1
USP28-208ENST00000540438 A0A1B0GW55 424 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 DUX4L2P0CJ85 424 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 DUX4L3P0CJ86 424 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 DUX4L4P0CJ87 422 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 DUX4L5P0CJ88 424 aa14.43□□□□□ -0.1
USP28-208ENST00000540438 DUX4L6P0CJ89 424 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms