RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MFSD2BA6NFX1 497 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 WIPF3A6NGB9 483 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 TNFSF10P50591 281 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 TAGLNQ01995 201 aaKnown RBP9.27□□□□□ -0.93
CLIP1-213ENST00000540338 GAPTQ8N292 157 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 BPIFCQ8NFQ6 507 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 FDCSPQ8NFU4 85 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 OR11L1Q8NGX0 322 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 WDYHV1Q96HA8 205 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 POM121L2Q96KW2 1035 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 ZNF552Q9H707 407 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-213ENST00000540338 TAAR3PQ9P1P4 343 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 CRYAAP02489 173 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 IRF2P14316 349 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 AKR1D1P51857 326 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM42Q69YG0 159 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 POC1AQ8NBT0 407 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 KCNJ16Q9NPI9 418 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 IGKV1D-8A0A087WSZ0 117 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 IGKV1-12A0A0C4DH73 117 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 IGKV1D-12P01611 117 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 IGLV3-1P01715 115 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 F2RL1P55085 397 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 TUSC1Q2TAM9 212 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 CXorf67Q86X51 503 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-213ENST00000540338 GLYATL2Q8WU03 294 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 WBP1Q96G27 269 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 AQP10Q96PS8 301 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 CCL28Q9NRJ3 127 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 KLK10O43240 276 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 ADAM20O43506 726 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 SCTP09683 121 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 EIF2S3P41091 472 aaKnown RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 PPT1P50897 306 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 UCP3P55916 312 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 DHRS11Q6UWP2 260 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 IL34Q6ZMJ4 242 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 OR8U1Q8NH10 309 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 UBALD1Q8TB05 177 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 BCL2L2Q92843 193 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 SAT2Q96F10 170 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 PKIBQ9C010 78 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 NKX6-2Q9C056 277 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM231Q9H6L2 316 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 NUP210LQ5VU65 1888 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM30CPA0ZSE6 113 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 PQLC2LA1A4F0 135 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 G3V3Q6 166 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 SPINT2O43291 252 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 TNFSF4P23510 183 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 PJVKQ0ZLH3 352 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 PXDC1Q5TGL8 231 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 OR10V1Q8NGI7 309 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 OR2G3Q8NGZ4 309 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 OR5P3Q8WZ94 311 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 RAB9BQ9NP90 201 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 MMP26Q9NRE1 261 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 LIN7CQ9NUP9 197 aaKnown RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 GNG12Q9UBI6 72 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 TINAGQ9UJW2 476 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 WDR87Q6ZQQ6 2873 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 CDS2O95674 445 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 CRYABP02511 175 aaKnown RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 CD80P33681 288 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 LTC4SQ16873 150 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 NSUN5P2Q63ZY6 315 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 ZNF709Q8N972 641 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 MDS2Q8NDY4 140 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 OR4A4PQ8NGN8 299 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 SPSB4Q96A44 273 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 NTNG2Q96CW9 530 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 UNKLQ9H9P5 680 aaKnown RBP9.26□□□□□ -0.93
CLIP1-213ENST00000540338 Q9N2K0 584 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 ATP23Q9Y6H3 246 aa9.26□□□□□ -0.93
CLIP1-213ENST00000540338 AGFG2O95081 481 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 S100A6P06703 90 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 UCP2P55851 309 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 EDDM3AQ14507 147 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 SMIM21Q3B7S5 101 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 SLC35G3Q8N808 338 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 GALMQ96C23 342 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 RHOFQ9HBH0 211 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 ADAMTS9Q9P2N4 1935 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 TTC28Q96AY4 2481 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 MPTX1A8MV57 137 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 DFFBO76075 338 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 HOXB1P14653 301 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-213ENST00000540338 VDAC1P21796 283 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 PMELP40967 661 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 P2RY1P47900 373 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 HLA-DRB3P79483 266 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 SRSF4Q08170 494 aaKnown RBP9.25□□□□□ -0.93
CLIP1-213ENST00000540338 OR2C3Q8N628 320 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 STRAPQ9Y3F4 350 aaKnown RBP9.25□□□□□ -0.93
CLIP1-213ENST00000540338 J3QW42 95 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 M0R1B8 84 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 DEDDO75618 318 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 RAB5CP51148 216 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 CXXC4Q9H2H0 198 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 LPAR3Q9UBY5 353 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms