RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 CACNG5Q9UF02 275 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 STARD10Q9Y365 291 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 IGHV1OR15-9A0A0B4J2B8 117 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.27□□□□□ -0.61
MSH6-210ENST00000540021 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.27□□□□□ -0.61
MSH6-210ENST00000540021 IGSF23A1L1A6 192 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 XKRY2A2RUG3 117 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 PSMB3P49720 205 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 UBE2G2P60604 165 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 PLGLB1Q02325 96 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 CLN3Q13286 438 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 COL13A1Q5TAT6 717 aaPredicted RBP11.27□□□□□ -0.61
MSH6-210ENST00000540021 ZNF100Q8IYN0 542 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 OR56B2PQ8NGI1 322 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 OR13D1Q8NGV5 346 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 ZNF837Q96EG3 531 aaPredicted RBP11.27□□□□□ -0.61
MSH6-210ENST00000540021 SLC25A22Q9H936 323 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 DMRT1Q9Y5R6 373 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 IGKV3D-11A0A0A0MRZ8 115 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 VAMP5O95183 116 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 AGAP20933 346 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 B3GAT1Q9P2W7 334 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 ZDHHC8Q9ULC8 765 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 DENND4AQ7Z401 1863 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 NUP210Q8TEM1 1887 aaPredicted RBP11.26□□□□□ -0.61
MSH6-210ENST00000540021 ZNF732B4DXR9 585 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 FUT6P51993 359 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 LBX1P52954 281 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 PCBD1P61457 104 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 RAB30Q15771 203 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 TMEM41BQ5BJD5 291 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 CCDC54Q8NEL0 328 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 MARS2Q96GW9 593 aaKnown RBP11.26□□□□□ -0.61
MSH6-210ENST00000540021 Q96M66 194 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 FAM234AQ9H0X4 552 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 WBP1LQ9NX94 342 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 KIAA1456Q9P272 454 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 KLF2Q9Y5W3 355 aaPredicted RBP11.26□□□□□ -0.61
MSH6-210ENST00000540021 ZNF407Q9C0G0 2248 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 KIR2DS1A0A191URI9 304 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 AQP7P3A6NL99 342 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 SIRPB1O00241 398 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 SCTP09683 121 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 CHRNA7P36544 502 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 KIR2DS4P43632 304 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 PMS2P11Q13670 270 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 KIR2DS1Q14954 304 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 LHFPL1Q86WI0 220 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 FAM185AQ8N0U4 392 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 CPT1CQ8TCG5 803 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 FOXB1Q99853 325 aa11.26□□□□□ -0.61
MSH6-210ENST00000540021 NOSIPQ9Y314 301 aaKnown RBP11.26□□□□□ -0.61
MSH6-210ENST00000540021 MAP1LC3B2A6NCE7 125 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 ANKRD30BLA7E2S9 258 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 EFNA2O43921 213 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 MPZP25189 248 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 HLA-BQ31612 363 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 SPINK9Q5DT21 86 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 PYY3Q5JQD4 70 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 SPATA46Q5T0L3 261 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 ZNF385CQ66K41 422 aaPredicted RBP11.25□□□□□ -0.61
MSH6-210ENST00000540021 OR2M3Q8NG83 312 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 MAP1LC3BQ9GZQ8 125 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 FSCN3Q9NQT6 498 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 TRDCB7Z8K6 153 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 SRSF10O75494 262 aaKnown RBP11.25□□□□□ -0.61
MSH6-210ENST00000540021 LSM6P62312 80 aaKnown RBP11.25□□□□□ -0.61
MSH6-210ENST00000540021 KHDC3LQ587J8 217 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 MYPOPQ86VE0 399 aaPredicted RBP11.25□□□□□ -0.61
MSH6-210ENST00000540021 LYZL4Q96KX0 146 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 CFHR5Q9BXR6 569 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 GPR87Q9BY21 358 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 TUBG2Q9NRH3 451 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 TREM2Q9NZC2 230 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 PDGFBP01127 241 aaPredicted RBP11.25□□□□□ -0.61
MSH6-210ENST00000540021 CXCL1P09341 107 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 NPBWR2P48146 333 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 ARF1P84077 181 aaKnown RBP11.25□□□□□ -0.61
MSH6-210ENST00000540021 GUSBP11Q6P575 273 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 D2HGDHQ8N465 521 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 PLPPR2Q96GM1 343 aa11.25□□□□□ -0.61
MSH6-210ENST00000540021 A0A1W2PPV4 95 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 E9PLN8 166 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 TIAF1O95411 115 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 KRASP01116 189 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 CCL3P10147 92 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 WIPI1Q5MNZ9 446 aaPredicted RBP11.24□□□□□ -0.61
MSH6-210ENST00000540021 CYB5R2Q6BCY4 276 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 BOD1Q96IK1 185 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 ZNF488Q96MN9 340 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 GINS3Q9BRX5 216 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 PTBP3O95758 552 aaKnown RBP11.24□□□□□ -0.61
MSH6-210ENST00000540021 RAC2P15153 192 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 FGF7P21781 194 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 VDAC1P21796 283 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 DDTP30046 118 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 SPEM2Q0P670 501 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 RAB35Q15286 201 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 ADGRG7Q96K78 797 aa11.24□□□□□ -0.61
MSH6-210ENST00000540021 PMS2P1A4D2B8 440 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms