RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 PMCHP20382 165 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 GATA2P23769 480 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 CCKARP32238 428 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 BCL6P41182 706 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 RND2P52198 227 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 ZNF133P52736 654 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 MRPS34P82930 218 aaKnown RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 CYCSP99999 105 aaKnown RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 IL15RAQ13261 267 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TAF9Q16594 264 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MEP1BQ16820 701 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MPV17L2Q567V2 206 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 FAM78BQ5VT40 261 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 KCTD18Q6PI47 426 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 SULF2Q8IWU5 870 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 OR10W1Q8NGF6 305 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 OR13G1Q8NGZ3 307 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 CLDND2Q8NHS1 167 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SUN3Q8TAQ9 357 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TMEM171Q8WVE6 324 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 STARD4Q96DR4 205 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SLC35A4Q96G79 324 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 PRAP1Q96NZ9 151 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 ARHGDIGQ99819 225 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 CCDC3Q9BQI4 270 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SDF2L1Q9HCN8 221 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 PRSS16Q9NQE7 514 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SOHLH2Q9NX45 425 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 HSPB7Q9UBY9 170 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 B9D1Q9UPM9 204 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SIT1Q9Y3P8 196 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 CELSR3Q9NYQ7 3312 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 PLXNA2O75051 1894 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MDC1Q14676 2089 aaKnown RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 TRPM6Q9BX84 2022 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 NBEAQ8NFP9 2946 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SERINC4A6NH21 518 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 GPR89AB7ZAQ6 455 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 C9orf172C9J069 976 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 DIRC3C9JPN6 131 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 C1QTNF3-AMACRE9PGA6 284 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SOCS1O15524 211 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 LAMTOR5O43504 91 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SNAI2O43623 268 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 OR7C2O60412 319 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 BRI3O95415 125 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 H2BFMP0C1H6 154 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SEC11BP0C7V7 166 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 GPR89BP0CG08 455 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 STAG3L3P0CL85 134 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 FOLR1P15328 257 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MPLP40238 635 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 BLKP51451 505 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TCTAP57738 103 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MFGE8Q08431 387 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 FHL1Q13642 323 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SHBQ15464 509 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 RSPO4Q2I0M5 234 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 ACTL10Q5JWF8 245 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 ASPHD1Q5U4P2 390 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 ZNF468Q5VIY5 522 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 ZAR1Q86SH2 424 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 NIT1Q86X76 327 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 HOGA1Q86XE5 327 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SPEM1Q8N4L4 309 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 Q8N976 141 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 AGBL5Q8NDL9 886 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 OR51G1Q8NGK1 321 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 FBXO32Q969P5 355 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MS4A6EQ96DS6 147 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 CNRIP1Q96F85 164 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 SLC22A12Q96S37 553 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 MCRIP2Q9BUT9 160 aaKnown RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 C19orf24Q9BVV8 132 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SAMD10Q9BYL1 202 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 FNDC4Q9H6D8 234 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 INPP5EQ9NRR6 644 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 LHX3Q9UBR4 397 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 GPR132Q9UNW8 380 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TRAPPC1Q9Y5R8 145 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 NOTCH4Q99466 2003 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 DYSFO75923 2080 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 IGLV3-10A0A075B6K4 115 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 IGKV1D-8A0A087WSZ0 117 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TRAV30A0A087WSZ9 112 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TRAV39A0A0B4J263 110 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 GJE1A6NN92 205 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 F5H5T6 163 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 K7EQS6 105 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SLC17A2O00624 439 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TNFRSF10CO14798 259 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 TAX1BP3O14907 124 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 CBLN1P23435 193 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 EPHA8P29322 1005 aaPredicted RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 TSPOP30536 169 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 P2RY1P47900 373 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 PDLIM4P50479 330 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 CLDN18P56856 261 aa3.23□□□□□ -1.89
MCF2-210ENST00000536274 SUMO1P63165 101 aaKnown RBP3.23□□□□□ -1.89
MCF2-210ENST00000536274 PSG6Q00889 435 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms