RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CD80P33681 288 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 NPBWR1P48145 328 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FGF12P61328 243 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 SNRPEP62304 92 aaKnown RBP11.3□□□□□ -0.6
LDLR-203ENST00000535915 SPIN3Q5JUX0 258 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 DPPA2Q7Z7J5 298 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 TMEM251Q8N6I4 163 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 NEK7Q8TDX7 302 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 POM121Q96HA1 1249 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 HS3ST6Q96QI5 342 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 PLSCR2Q9NRY7 297 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM212BQ9NTI7 297 aaPredicted RBP11.3□□□□□ -0.6
LDLR-203ENST00000535915 IL36RNQ9UBH0 155 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 TMED3Q9Y3Q3 217 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 TRBV23-1A0A0A0MS06 115 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 BORCS7-ASMTA0A0B4J1R7 106 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 A0A1W2PNU3 283 aaPredicted RBP11.29□□□□□ -0.6
LDLR-203ENST00000535915 TRAPPC2LH3BP13 241 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 GATCO43716 136 aaKnown RBP11.29□□□□□ -0.6
LDLR-203ENST00000535915 NGFP01138 241 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 SFTA3P0C7M3 94 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 CBR1P16152 277 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 IL13RA2Q14627 380 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 C3AR1Q16581 482 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 GPR157Q5UAW9 335 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 SECTM1Q8WVN6 248 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 MTCH1Q9NZJ7 389 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 TK1P04183 234 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 OR8U9P0C7N5 309 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 COX5BP10606 129 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 GNRHRP30968 328 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 FAM76BQ5HYJ3 339 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 SAXO1Q8IYX7 474 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 OR8U1Q8NH10 309 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 ZNF552Q9H707 407 aaPredicted RBP11.29□□□□□ -0.6
LDLR-203ENST00000535915 Q9N2K0 584 aa11.29□□□□□ -0.6
LDLR-203ENST00000535915 RCL1Q9Y2P8 373 aaKnown RBP11.29□□□□□ -0.6
LDLR-203ENST00000535915 C21orf140B9A014 251 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 S100A8P05109 93 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 SCTP09683 121 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 P2RY1P47900 373 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 NHLH2Q02577 135 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 PLP2Q04941 152 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 DHRS7BQ6IAN0 325 aaPredicted RBP11.28□□□□□ -0.6
LDLR-203ENST00000535915 FIP1L1Q6UN15 594 aaKnown RBP11.28□□□□□ -0.6
LDLR-203ENST00000535915 RBMS3Q6XE24 437 aaKnown RBP11.28□□□□□ -0.6
LDLR-203ENST00000535915 MCEMP1Q8IX19 187 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 MKXQ8IYA7 352 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 FAM185AQ8N0U4 392 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 ZNF565Q8N9K5 539 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 HIST1H2AAQ96QV6 131 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 WFDC1Q9HC57 220 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 MIOXQ9UGB7 285 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 ZDHHC8Q9ULC8 765 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 UBE2J1Q9Y385 318 aaPredicted RBP11.28□□□□□ -0.6
LDLR-203ENST00000535915 GPR179Q6PRD1 2367 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 ZNF724A8MTY0 619 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 CD5P06127 495 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 ARR3P36575 388 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 GNMTQ14749 295 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 TBC1D26Q86UD7 250 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 TMEM222Q9H0R3 208 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 PRRC2CQ9Y520 2896 aaKnown RBP11.28□□□□□ -0.6
LDLR-203ENST00000535915 TSPAN15O95858 294 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 NAPSAO96009 420 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 SRPXP78539 464 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 Q6ZS49 121 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 NUFIP2Q7Z417 695 aaKnown RBP11.28□□□□□ -0.6
LDLR-203ENST00000535915 ZNF695Q8IW36 515 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 RXFP4Q8TDU9 374 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 POM121L2Q96KW2 1035 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 ARV1Q9H2C2 271 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 OR51B6Q9H340 312 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 POMT1Q9Y6A1 747 aa11.28□□□□□ -0.6
LDLR-203ENST00000535915 NKX2-6A6NCS4 301 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 SYNGR1O43759 233 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 SEC11BP0C7V7 166 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 SPINK2P20155 84 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 NFYBP25208 207 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 S100PP25815 95 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 DVL1P1P54792 670 aaPredicted RBP11.27□□□□□ -0.61
LDLR-203ENST00000535915 ZNF616Q08AN1 781 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 MPV17LQ2QL34 196 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 DMBX1Q8NFW5 382 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 OR4D5Q8NGN0 318 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 KIRREL1Q96J84 757 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 GPHA2Q96T91 129 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 OR51M1Q9H341 326 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 C12orf49Q9H741 205 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 CD300LBA8K4G0 201 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 TRDCB7Z8K6 153 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 NME2P1O60361 137 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 MEOX1P50221 254 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 RNPS1Q15287 305 aaKnown RBP11.27□□□□□ -0.61
LDLR-203ENST00000535915 MIDNQ504T8 468 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 ZNF818PQ6ZRF7 136 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 SUMF1Q8NBK3 374 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 OR5A2Q8NGI9 324 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 GINS3Q9BRX5 216 aa11.27□□□□□ -0.61
LDLR-203ENST00000535915 RNF122Q9H9V4 155 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms