RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PLPPR1Q8TBJ4 325 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 C17orf50Q8WW18 174 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 LINC00574Q9H8X3 128 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 TCF7L1Q9HCS4 588 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 PCDHB16Q9NRJ7 776 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 TAS2R3Q9NYW6 316 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 ZNRD1Q9P1U0 126 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 POMT1Q9Y6A1 747 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 A0A1W2PRD5 423 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 A0A1W2PRF3 423 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 A0A1W2PRM7 423 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 MEIOCA2RUB1 952 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 FUOMA2VDF0 154 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 ODF3BA8MYP8 253 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 SLC22A1O15245 554 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 CSTBP04080 98 aaKnown RBP10.55□□□□□ -0.72
VPS28-216ENST00000533806 SERPINA2P20848 420 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 KCNJ3P48549 501 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 ATXN7L3Q14CW9 347 aaPredicted RBP10.55□□□□□ -0.72
VPS28-216ENST00000533806 MPV17LQ2QL34 196 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 KRBOX4Q5JUW0 171 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 LDLRAD2Q5SZI1 272 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 C16orf87Q6PH81 154 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 ZNF782Q6ZMW2 699 aaPredicted RBP10.55□□□□□ -0.72
VPS28-216ENST00000533806 SUMF2Q8NBJ7 301 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 SSMEM1Q8WWF3 244 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 ZDHHC16Q969W1 377 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 SLC25A28Q96A46 364 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 FOXRED1Q96CU9 486 aaPredicted RBP10.55□□□□□ -0.72
VPS28-216ENST00000533806 S100A13Q99584 98 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 DPCDQ9BVM2 203 aaPredicted RBP10.55□□□□□ -0.72
VPS28-216ENST00000533806 MEGF9Q9H1U4 602 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 NDUFB11Q9NX14 153 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 RCC2Q9P258 522 aaKnown RBP10.55□□□□□ -0.72
VPS28-216ENST00000533806 GHRLQ9UBU3 117 aa10.55□□□□□ -0.72
VPS28-216ENST00000533806 OR7C1O76099 320 aaPredicted RBP10.54□□□□□ -0.72
VPS28-216ENST00000533806 IGHV4-59P01825 116 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 FBP1P09467 338 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 HKR1P10072 659 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 QRFPP83859 136 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 TAF9Q16594 264 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 C17orf58Q2M2W7 97 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 PAN3Q58A45 887 aaKnown RBP10.54□□□□□ -0.72
VPS28-216ENST00000533806 ZNF626Q68DY1 528 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 AWAT2Q6E213 333 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 SIGIRRQ6IA17 410 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 ZNF773Q6PK81 442 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 HEPN1Q6WQI6 88 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 GAPTQ8N292 157 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 BEND2Q8NDZ0 799 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 Q96M66 194 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 BARHL1Q9BZE3 327 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 CHIAQ9BZP6 476 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 TMEM133Q9H2Q1 129 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 KIF25Q9UIL4 384 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 FAM96BQ9Y3D0 163 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 SESN1Q9Y6P5 492 aa10.54□□□□□ -0.72
VPS28-216ENST00000533806 DSCAML1Q8TD84 2053 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 TRGV10A0A0A0MS01 117 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A10PA6NDY2 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A18PA6NE21 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A16PA6NEW6 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A20PA6NIJ5 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A7PA6NKC0 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A22PA8MWA6 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A12PA8MX19 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A5PA8MXJ8 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A23PA8MXZ1 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 HSPB6O14558 160 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 ARL6IP5O75915 188 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 CLPXO76031 633 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A15PP0C7V4 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A13PP0C7W8 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A14PP0C7W9 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A24PP0C7X0 464 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 UBBP0CG47 229 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 VSIG8P0DPA2 414 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 MGMTP16455 207 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 GALP22466 123 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 COX7A1P24310 79 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 GDNFP39905 211 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 AANATQ16613 207 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 KCTD21Q4G0X4 260 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 GLT8D1Q68CQ7 371 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 SLC35E4Q6ICL7 350 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 BAIAP2L2Q6UXY1 529 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 SVOPQ8N4V2 548 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 OR13A1Q8NGR1 328 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 OR13D1Q8NGV5 346 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 PIFOQ8TCI5 191 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 GAL3ST2Q9H3Q3 398 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 BANF2Q9H503 90 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 OR6C3Q9NZP0 311 aa10.53□□□□□ -0.72
VPS28-216ENST00000533806 A0A087X0M5 115 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 IGHV2-26A0A0B4J1V2 119 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 KBTBD11-OT1A0A1B0GTJ5 212 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 A0A1B0GX30 115 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 TRDV1A0A1B0GX56 115 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 SHISA3A0PJX4 238 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 FAM181BA6NEQ2 426 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms