RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 Q6P435 159 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 OR9G1Q8NH87 305 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 TOMM40LQ969M1 308 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 PHF21AQ96BD5 680 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 COQ2Q96H96 371 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 FAM192AQ9GZU8 254 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 INPP5EQ9NRR6 644 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 AASSQ9UDR5 926 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 ALX3O95076 343 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 ZFPL1O95159 310 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 IGLL1P15814 213 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 RAB3AP20336 220 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 GDNFP39905 211 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 RSU1Q15404 277 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 RNF144BQ7Z419 303 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 PARP16Q8N5Y8 322 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 HAVCR2Q8TDQ0 301 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 TNFAIP8L1Q8WVP5 186 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 MYDGFQ969H8 173 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 PPIL3Q9H2H8 161 aaKnown RBP11.77□□□□□ -0.53
VPS28-215ENST00000531924 ISG20L2Q9H9L3 353 aaKnown RBP11.77□□□□□ -0.53
VPS28-215ENST00000531924 AMBNQ9NP70 447 aa11.77□□□□□ -0.53
VPS28-215ENST00000531924 AURKAIP1Q9NWT8 199 aaPredicted RBP11.77□□□□□ -0.53
VPS28-215ENST00000531924 SH2D7A6NKC9 451 aaPredicted RBP11.76□□□□□ -0.53
VPS28-215ENST00000531924 PLXNB1O43157 2135 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 CD2P06729 351 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 SLC35A2P78381 396 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 RAB40BQ12829 278 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 HES1Q14469 280 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 ZSCAN26Q16670 478 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 LTC4SQ16873 150 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 KLHL22Q53GT1 634 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 FOXB2Q5VYV0 432 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 WFDC9Q8NEX5 89 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 OR51T1Q8NGJ9 327 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 PDCD1LG2Q9BQ51 273 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 C9orf16Q9BUW7 83 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 ERVK13-1Q9NX77 482 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 CALYQ9NYX4 217 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 KIF25Q9UIL4 384 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 MOB4Q9Y3A3 225 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 RPL36Q9Y3U8 105 aaKnown RBP11.76□□□□□ -0.53
VPS28-215ENST00000531924 HSPE1-MOB4S4R3N1 261 aa11.76□□□□□ -0.53
VPS28-215ENST00000531924 NOTCH3Q9UM47 2321 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 A0A087X0M5 115 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 A0A1B0GX30 115 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 HTR3BO95264 441 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 SOX2P48431 317 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 ZP1P60852 638 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 MADCAM1Q13477 382 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 CDK5R1Q15078 307 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 C17orf58Q2M2W7 97 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 ELP2Q6IA86 826 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 PXT1Q8NFP0 134 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 CNIH3Q8TBE1 160 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 KIRREL1Q96J84 757 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 S100A13Q99584 98 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 IDI2-AS1Q9NZ38 188 aa11.75□□□□□ -0.53
VPS28-215ENST00000531924 PSMB11A5LHX3 300 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 E9PI62 339 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 H3BNX3 289 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 LY6LH3BQJ8 138 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 J3QR06 171 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 MPIG6BO95866 241 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 IGHV3-7P01780 117 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 KCNJ3P48549 501 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 GNG10P50151 68 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 PPP3R1P63098 170 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 IL13RA2Q14627 380 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 TCTEX1D4Q5JR98 221 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 THNSL2Q86YJ6 484 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 OR13A1Q8NGR1 328 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 OR10X1Q8NGY0 326 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 OR56B4Q8NH76 319 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 RHOXF1Q8NHV9 184 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 MRGPRDQ8TDS7 321 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 GPR148Q8TDV2 347 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 LEAP2Q969E1 77 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 RCC1LQ96I51 464 aaKnown RBP11.74□□□□□ -0.53
VPS28-215ENST00000531924 FAM118AQ9NWS6 357 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 ING4Q9UNL4 249 aa11.74□□□□□ -0.53
VPS28-215ENST00000531924 TRAV24A0A0B4J272 114 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 LOC100130705A0A1B0GUX0 176 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 GABRPO00591 440 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 DUS4LO95620 317 aaKnown RBP11.73□□□□□ -0.53
VPS28-215ENST00000531924 IL1AP01583 271 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 CSTBP04080 98 aaKnown RBP11.73□□□□□ -0.53
VPS28-215ENST00000531924 SNRNP70P08621 437 aaKnown RBP11.73□□□□□ -0.53
VPS28-215ENST00000531924 TMEM11P17152 192 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 RAB7AP51149 207 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 HNF4GQ14541 408 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 PIGYQ3MUY2 71 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 TMPRSS11AQ6ZMR5 421 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 OSR2Q8N2R0 312 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 DRAM1Q8N682 238 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 OR51D1Q8NGF3 324 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 OR52I1Q8NGK6 324 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 OR10K1Q8NGX5 313 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 RFESDQ8TAC1 157 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 DSCAML1Q8TD84 2053 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms