RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 C19orf12Q9NSK7 152 aa11.92□□□□□ -0.5
CPSF1-206ENST00000531480 KPTNQ9Y664 436 aa11.92□□□□□ -0.5
CPSF1-206ENST00000531480 AUP1Q9Y679 476 aa11.92□□□□□ -0.5
CPSF1-206ENST00000531480 AIPO00170 330 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 SIRPB1O00241 398 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 DEGS1O15121 323 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 ZNF44P15621 663 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 KCNJ3P48549 501 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 SNU13P55769 128 aaKnown RBP11.91□□□□□ -0.5
CPSF1-206ENST00000531480 OR10A3P58181 314 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 RPL31P62899 125 aaKnown RBP11.91□□□□□ -0.5
CPSF1-206ENST00000531480 MEF2CQ06413 473 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-206ENST00000531480 LSAMPQ13449 338 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 TUSC1Q2TAM9 212 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 TCF23Q7RTU1 214 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 C11orf42Q8N5U0 333 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 C15orf40Q8WUR7 153 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 WDR12Q9GZL7 423 aaKnown RBP11.91□□□□□ -0.5
CPSF1-206ENST00000531480 C6orf62Q9GZU0 229 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-206ENST00000531480 RNF167Q9H6Y7 350 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 PLGRKTQ9HBL7 147 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 ZNF581Q9P0T4 197 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 STEAP1Q9UHE8 339 aa11.91□□□□□ -0.5
CPSF1-206ENST00000531480 M0R1W7 72 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 RGS5O15539 181 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 GLAP06280 429 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 ARSBP15848 533 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 HNF1AP20823 631 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 GABRR1P24046 479 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 DLX6P56179 175 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 RPS27AP62979 156 aaKnown RBP11.9□□□□□ -0.5
CPSF1-206ENST00000531480 PDCD1Q15116 288 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 GRK1Q15835 563 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 RAB11BQ15907 218 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 IDNKQ5T6J7 187 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 TMEM200BQ69YZ2 307 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 SIGIRRQ6IA17 410 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 METAP1DQ6UB28 335 aaPredicted RBP11.9□□□□□ -0.5
CPSF1-206ENST00000531480 FAM89BQ8N5H3 189 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 Q8N7P7 452 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 H1FXQ92522 213 aaKnown RBP11.9□□□□□ -0.5
CPSF1-206ENST00000531480 PHF21AQ96BD5 680 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 FAM3DQ96BQ1 224 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 COQ2Q96H96 371 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 WDFY2Q96P53 400 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 SLIRPQ9GZT3 109 aaKnown RBP11.9□□□□□ -0.5
CPSF1-206ENST00000531480 CHST6Q9GZX3 395 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 NXF2Q9GZY0 626 aaKnown RBP11.9□□□□□ -0.5
CPSF1-206ENST00000531480 BANF2Q9H503 90 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 SPACA1Q9HBV2 294 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 ETV7Q9Y603 341 aa11.9□□□□□ -0.5
CPSF1-206ENST00000531480 DNHD1Q96M86 4753 aa11.9□□□□□ -0.51
CPSF1-206ENST00000531480 CUBNO60494 3623 aa11.9□□□□□ -0.51
CPSF1-206ENST00000531480 H3BUI4 141 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 CRTAPO75718 401 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-206ENST00000531480 OR7C1O76099 320 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-206ENST00000531480 RBP4P02753 201 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 P2RX3P56373 397 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 ZNF45Q02386 682 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 TAF9Q16594 264 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 CHRFAM7AQ494W8 412 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 KLF17Q5JT82 389 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-206ENST00000531480 OR10K2Q6IF99 312 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 SFXN4Q6P4A7 337 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 GDPD3Q7L5L3 318 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 GAPTQ8N292 157 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 SUMF2Q8NBJ7 301 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 OR51D1Q8NGF3 324 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 CORO2AQ92828 525 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 PTX4Q96A99 478 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 TBX15Q96SF7 602 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 TMEM59Q9BXS4 323 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 BEX2Q9BXY8 128 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 SELENOIQ9C0D9 397 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 PPA2Q9H2U2 334 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 LINC00312Q9Y6C7 94 aa11.89□□□□□ -0.51
CPSF1-206ENST00000531480 FOXI3A8MTJ6 420 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-206ENST00000531480 C17orf98A8MV24 154 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 SCGNO76038 276 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 MPIG6BO95866 241 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 FAM157CP0CG43 387 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 CGB3P0DN86 165 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 CGB7P0DN87 165 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 PTBP1P26599 531 aaKnown RBP eCLIP11.88□□□□□ -0.51
CPSF1-206ENST00000531480 CLDN12P56749 244 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 ARF6P62330 175 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 SCN1BQ07699 218 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 ZNF273Q14593 569 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 ZNF846Q147U1 533 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 P2RY14Q15391 338 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 C2orf76Q3KRA6 126 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 PAN3Q58A45 887 aaKnown RBP11.88□□□□□ -0.51
CPSF1-206ENST00000531480 KIAA2026Q5HYC2 2103 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 HES5Q5TA89 166 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 METTL11BQ5VVY1 283 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 RSBN1Q5VWQ0 802 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-206ENST00000531480 BAIAP2L2Q6UXY1 529 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 PRIMA1Q86XR5 153 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 OR4M1Q8NGD0 313 aa11.88□□□□□ -0.51
CPSF1-206ENST00000531480 NANPQ8TBE9 248 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms