RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	IL22RA2	Q969J5	263 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	MOAP1	Q96BY2	351 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SEH1L	Q96EE3	360 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	IMP4	Q96G21	291 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GRAMD2B	Q96HH9	432 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	VSTM2L	Q96N03	204 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ZFP3	Q96NJ6	502 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	YPEL2	Q96QA6	119 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	TNFRSF13C	Q96RJ3	184 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GPR22	Q99680	433 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ASCL2	Q99929	193 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF649	Q9BS31	505 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ULBP2	Q9BZM5	246 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	OR11A1	Q9GZK7	315 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	MFSD1	Q9H3U5	465 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	C1orf198	Q9H425	327 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	PIGV	Q9NUD9	493 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	AIG1	Q9NVV5	245 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF586	Q9NXT0	402 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	DNAJC27	Q9NZQ0	273 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	CCDC167	Q9P0B6	97 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ABRACL	Q9P1F3	81 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	KCNK6	Q9Y257	313 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	RPL36	Q9Y3U8	105 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	NUP210L	Q5VU65	1888 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	FXYD6-FXYD2	A0A087WZ82	144 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	LRP5L	A4QPB2	252 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	PSMB11	A5LHX3	300 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	XRCC2	O43543	280 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	TRAF3IP2	O43734	574 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	FARS2	O95363	451 aa	Known RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	CDS2	O95674	445 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	PMS2P2	O95744	297 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	HAND1	O96004	215 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	APOC2	P02655	101 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	GAPDH	P04406	335 aa	Known RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	IGLC1	P0CG04	106 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	ACP2	P11117	423 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	PLA2G2A	P14555	144 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	EPCAM	P16422	314 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	CD27	P26842	260 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	S100A7	P31151	101 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	DLST	P36957	453 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	CTRL	P40313	264 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	ID1	P41134	155 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	DNASE1L1	P49184	302 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	DAP	P51397	102 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	TAS2R31	P59538	309 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	ERVK11-1	P61568	191 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	RPS28	P62857	69 aa	Known RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	GNG3	P63215	75 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	CRADD	P78560	199 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	HSD52	Q0P140	79 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	ALKBH6	Q3KRA9	238 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM78	Q5T7P6	136 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	WDR25	Q64LD2	544 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	AGTRAP	Q6RW13	159 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	NHLRC1	Q6VVB1	395 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM184A	Q6ZMB5	413 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	STPG4	Q8N801	248 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	INO80E	Q8NBZ0	244 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	OR2Y1	Q8NGV0	311 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	OR4C3	Q8NH37	302 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	FAM110B	Q8TC76	370 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	LGALS14	Q8TCE9	139 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	FCAMR	Q8WWV6	532 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	GEMIN6	Q8WXD5	167 aa	Known RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	FAM3C	Q92520	227 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	DYRK2	Q92630	601 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	PPCDC	Q96CD2	204 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	DNAJC19	Q96DA6	116 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	COQ2	Q96H96	371 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	DGAT2	Q96PD7	388 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	MICU1	Q9BPX6	476 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	SAMD10	Q9BYL1	202 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	STRADB	Q9C0K7	418 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	FXYD6	Q9H0Q3	95 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110		Q9N2K0	584 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	KCNJ16	Q9NPI9	418 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	PRSS16	Q9NQE7	514 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	CLN6	Q9NWW5	311 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	COMMD9	Q9P000	198 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	SLC23A2	Q9UGH3	650 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	NAT8B	Q9UHF3	227 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF107	Q9UII5	783 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-231	ENST00000531110	PPIAL4A	Q9Y536	164 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	LIPG	Q9Y5X9	500 aa		4.77	□□□□□ -1.65
CD44-231	ENST00000531110	IGHV2-26	A0A0B4J1V2	119 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110		A0A0G2JMM0	328 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110		A0A1W2PPB8	328 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	hADV38S2	A0JD32	116 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM8B	A6NDV4	472 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TLCD2	A6NGC4	264 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	LIPT2	A6NK58	231 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	KIR3DP1	A8MWS1	328 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	FAM220BP	B1ANY3	271 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	RFXANK	O14593	260 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ERI3	O43414	337 aa	Known RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF207	O43670	478 aa	Known RBP	4.76	□□□□□ -1.65

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