RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 LINC00869P0C866 280 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 GTF2H1P32780 548 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 SLC18A1P54219 525 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 BSXQ3C1V8 233 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 ABCA11PQ4W5N1 156 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 CLEC12AQ5QGZ9 265 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 FAM222AQ5U5X8 452 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 CLEC19AQ6UXS0 136 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 USP50Q70EL3 339 aaPredicted RBP2.52□□□□□ -2.01
CD44-223ENST00000526553 SSX7Q7RTT5 188 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 CYP4Z1Q86W10 505 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 SPATA24Q86W54 205 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 GAPTQ8N292 157 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 ZCCHC24Q8N2G6 241 aaKnown RBP2.52□□□□□ -2.01
CD44-223ENST00000526553 RNF182Q8N6D2 247 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 SLC25A29Q8N8R3 303 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 NECAP1Q8NC96 275 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 OR5T1Q8NG75 326 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 OR4K17Q8NGC6 315 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 CLHC1Q8NHS4 586 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 CIRBP-AS1Q8TBR5 109 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 ORAOV1Q8WV07 137 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 RORBQ92753 470 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 S100PBPQ96BU1 408 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 ZNF75AQ96N20 296 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 MED10Q9BTT4 135 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 BEX2Q9BXY8 128 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 API5Q9BZZ5 524 aaKnown RBP2.52□□□□□ -2.01
CD44-223ENST00000526553 NXF2Q9GZY0 626 aaKnown RBP2.52□□□□□ -2.01
CD44-223ENST00000526553 WFDC1Q9HC57 220 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 DIABLOQ9NR28 239 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 C21orf62Q9NYP8 219 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 RAB22AQ9UL26 194 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 FARSAQ9Y285 508 aaKnown RBP2.52□□□□□ -2.01
CD44-223ENST00000526553 CBY1Q9Y3M2 126 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 ENPP4Q9Y6X5 453 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 SCN7AQ01118 1682 aa2.52□□□□□ -2.01
CD44-223ENST00000526553 UBR2Q8IWV8 1755 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 IGHV1-3A0A0C4DH29 117 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 TMEM72A0PK05 275 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 A8MWL6 223 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 UPK1AO00322 258 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 SCN2BO60939 215 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 CYB5R3P00387 301 aaPredicted RBP2.51□□□□□ -2.01
CD44-223ENST00000526553 HLA-DQB1P01920 261 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 MAS1P04201 325 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 SNRPAP09012 282 aaKnown RBP2.51□□□□□ -2.01
CD44-223ENST00000526553 ZNF286BP0CG31 522 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 MAGEA3P43357 314 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 TTPAP49638 278 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 XKP51811 444 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 UBE2KP61086 200 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 GRB2P62993 217 aaKnown RBP2.51□□□□□ -2.01
CD44-223ENST00000526553 FLOT2Q14254 428 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 PMVKQ15126 192 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 TRIP13Q15645 432 aaPredicted RBP2.51□□□□□ -2.01
CD44-223ENST00000526553 AHSA2Q719I0 299 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 ORMDL3Q8N138 153 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 CCNYL1Q8N7R7 359 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 ZNF615Q8N8J6 731 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 OR2M7Q8NG81 312 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 OR13G1Q8NGZ3 307 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 ZNF461Q8TAF7 563 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 NELFBQ8WX92 580 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 SMIM8Q96KF7 97 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 QKIQ96PU8 341 aaKnown RBP eCLIP2.51□□□□□ -2.01
CD44-223ENST00000526553 CDX2Q99626 313 aaPredicted RBP2.51□□□□□ -2.01
CD44-223ENST00000526553 RNF5Q99942 180 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 MRPL20Q9BYC9 149 aaKnown RBP2.51□□□□□ -2.01
CD44-223ENST00000526553 SDHAF3Q9NRP4 125 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 ZNF835Q9Y2P0 537 aa2.51□□□□□ -2.01
CD44-223ENST00000526553 KIR2DS1A0A191URI9 304 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 TRPC5OSA6NMA1 111 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 OR2AT4A6NND4 320 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 SGCEO43556 437 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 CCNKO75909 580 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 ZNF806P0C7X5 589 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 SLC35E2BP0CK96 405 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 MUC1P15941 1255 aaPredicted RBP2.5□□□□□ -2.01
CD44-223ENST00000526553 NPY1RP25929 384 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 OR2B6P58173 313 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 RPL10AP62906 217 aaKnown RBP2.5□□□□□ -2.01
CD44-223ENST00000526553 CD164Q04900 197 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 ZNF816Q0VGE8 651 aaPredicted RBP2.5□□□□□ -2.01
CD44-223ENST00000526553 TRAM1Q15629 374 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 CEACAM16Q2WEN9 425 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 Q6ZT83 130 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 NT5DC3Q86UY8 548 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 TMEM25Q86YD3 366 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 LRRC52Q8N7C0 313 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 ZNF738Q8NE65 137 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 OR4K2Q8NGD2 314 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 PHF10Q8WUB8 498 aaKnown RBP2.5□□□□□ -2.01
CD44-223ENST00000526553 CCDC12Q8WUD4 166 aaPredicted RBP2.5□□□□□ -2.01
CD44-223ENST00000526553 RBMXL1Q96E39 390 aaKnown RBP2.5□□□□□ -2.01
CD44-223ENST00000526553 SPACA5Q96QH8 159 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 PITX2Q99697 317 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 ZNF649Q9BS31 505 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 NDEL1Q9GZM8 345 aa2.5□□□□□ -2.01
CD44-223ENST00000526553 ENPP5Q9UJA9 477 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms