RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 NIT1Q86X76 327 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF683Q8IZ20 524 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SYS1Q8N2H4 156 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MS4A15Q8N5U1 240 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM251Q8N6I4 163 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 METTL13Q8N6R0 699 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CSNK1A1LQ8N752 337 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF738Q8NE65 137 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 DUSP18Q8NEJ0 188 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SLC30A7Q8NEW0 376 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR4F17Q8NGA8 305 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR4D9Q8NGE8 314 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR5D13Q8NGL4 314 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR4P4Q8NGL7 312 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR4D5Q8NGN0 318 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR9G4Q8NGQ1 327 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR10X1Q8NGY0 326 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR2G2Q8NGZ5 317 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR2T4Q8NH00 348 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MCFD2Q8NI22 146 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 M1APQ8TC57 530 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RXFP4Q8TDU9 374 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NRGNQ92686 78 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RERGQ96A58 199 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 MRPS24Q96EL2 167 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 SMARCD1Q96GM5 515 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 COQ2Q96H96 371 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PYURFQ96I23 114 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ITCHQ96J02 903 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZFP3Q96NJ6 502 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 AMDHD1Q96NU7 426 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR4F4Q96R69 305 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR52E6Q96RD3 313 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 S100A13Q99584 98 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GINS4Q9BRT9 223 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FEM1AQ9BSK4 669 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 THTPAQ9BU02 230 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 C20orf24Q9BUV8 137 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GPR174Q9BXC1 333 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FTHL17Q9BXU8 183 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MS4A8Q9BY19 250 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SLIRPQ9GZT3 109 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 ABCG5Q9H222 651 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TXNIPQ9H3M7 391 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CST9LQ9H4G1 147 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM231Q9H6L2 316 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ACTR8Q9H981 624 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ISYNA1Q9NPH2 558 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SMCO4Q9NRQ5 59 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 SPANXCQ9NY87 97 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NUFIP1Q9UHK0 495 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 LGALS13Q9UHV8 139 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 JPT1Q9UK76 154 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SAMD4AQ9UPU9 718 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 POMPQ9Y244 141 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FARSAQ9Y285 508 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 PIGLQ9Y2B2 252 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 KPTNQ9Y664 436 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MYH10P35580 1976 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF638Q14966 1978 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 PPLO60437 1756 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 IQGAP1P46940 1657 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 PTPN23Q9H3S7 1636 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MROH2BQ7Z745 1585 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 KIAA0586Q9BVV6 1533 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ATP10DQ9P241 1426 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TSPOAP1O95153 1857 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 PPIAL4EA0A075B759 164 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 PPIAL4CA0A0B4J2A2 164 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CLDN24A6NM45 220 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ANKRD30BLA7E2S9 258 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 COLCA2A8K830 154 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 BTNL10A8MVZ5 291 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ZNF99A8MXY4 864 aaPredicted RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 PPIAL4DF5H284 164 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 H3BMH7 237 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 GFYI3L273 518 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 M0QXV9 152 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CHEK1O14757 476 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 AZIN1O14977 448 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SLC31A1O15431 190 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CCL25O15444 150 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 RS1O15537 224 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR2T1O43869 369 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 RDH16O75452 317 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 STK17BO94768 372 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 S1PR2O95136 353 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 UTS2O95399 124 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ETHE1O95571 254 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 GPR75O95800 540 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SLC25A27O95847 323 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HPRT1P00492 218 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MT-ND4P03905 459 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CD74P04233 296 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TYMSP04818 313 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ARG1P05089 322 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ISG15P05161 165 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CST2P09228 141 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HIST1H2AGP0C0S8 130 aaPredicted RBP1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms