RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TIMP1P01033 207 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 IL2RAP01589 272 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 VAX1Q5SQQ9 334 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 ZNF660Q6AZW8 331 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 OR11H1Q8NG94 326 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 OR11H2Q8NH07 326 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MRGPRX3Q96LB0 322 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 PAAF1Q9BRP4 392 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 ZNF665Q9H7R5 613 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 C20orf141Q9NUB4 165 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 CARHSP1Q9Y2V2 147 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 FER1L4A9Z1Z3 1794 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 FGF17O60258 216 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 ZNF865P0CJ78 1059 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 GZMHP20718 246 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 IRF3Q14653 427 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MICBQ29980 383 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 ZNF750Q32MQ0 723 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MRPL52Q86TS9 123 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 LDLRAD3Q86YD5 345 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 TGIF2LYQ8IUE0 185 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 BAHD1Q8TBE0 780 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 LINC00615Q96LM1 132 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 LTB4R2Q9NPC1 389 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 C1RLQ9NZP8 487 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 AUP1Q9Y679 476 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MICAL3Q7RTP6 2002 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 DPRXA6NFQ7 191 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 SLC25A17O43808 307 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 HOXD4P09016 255 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 CD1BP29016 333 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 IBA57Q5T440 356 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 BEND2Q8NDZ0 799 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 AQP10Q96PS8 301 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MRPS18AQ9NVS2 196 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MOB4Q9Y3A3 225 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 TRBV5-4A0A0C4DH59 114 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 SPRY1O43609 319 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 PRKRAO75569 313 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 LYZL6O75951 148 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 NKX2-2O95096 273 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 LYZP61626 148 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 ZXDAP98168 799 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 SKP2Q13309 424 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 OR5R1Q8NH85 324 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 OR13C6PQ8NH95 151 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 OR2V1Q8NHB1 315 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 C16orf52Q8NHV5 167 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 ZBP1Q9H171 429 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 NPVFQ9HCQ7 196 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 MED29Q9NX70 200 aa9.94□□□□□ -0.82
LIMCH1-208ENST00000508501 FAM90A26D6RGX4 464 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 PPYP01298 95 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 LINC00614P0C842 121 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 ORM2P19652 201 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 HOXA4Q00056 320 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 CD300CQ08708 224 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 SPANXN1Q5VSR9 72 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 TSPAN32Q96QS1 320 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 SPCS1Q9Y6A9 102 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 AGAP20933 346 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 OR10D3Q8NH80 312 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 K7ESF4 209 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 ZNF735P0CB33 412 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 CTAG1AP78358 180 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 OR1N1Q8NGS0 311 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 TMEM208Q9BTX3 173 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 GPR27Q9NS67 375 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 ATP23Q9Y6H3 246 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 CTSVO60911 334 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 PPP1R17O96001 155 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 TRGC1P0CF51 173 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 PPP1CCP36873 323 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 ATP5IP56385 69 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 LYG1Q8N1E2 194 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 PCGF1Q9BSM1 259 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 CNTD2Q9H8S5 307 aa9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 MBD1Q9UIS9 605 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-208ENST00000508501 CFDP00746 253 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 CKS2P33552 79 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 DSCR4P56555 118 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 ANKRD37Q7Z713 158 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 OR1B1Q8NGR6 318 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 PPP1R3EQ9H7J1 279 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 TMEM140Q9NV12 185 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 MED1Q15648 1581 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 TMEM189A5PLL7 270 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 ERVH48-1M5A8F1 160 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 RCC1P18754 421 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 KHDC1LQ5JSQ8 128 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 HOGA1Q86XE5 327 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 TMEFF1Q8IYR6 380 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 SFXN3Q9BWM7 321 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 TPSD1Q9BZJ3 242 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 A0A1W2PQM1 296 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 ICOSLGO75144 302 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 CXCL12P48061 93 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 NHLRC3Q5JS37 347 aa9.92□□□□□ -0.82
LIMCH1-208ENST00000508501 Q5PR19 223 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms