RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SSX2Q16385 188 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 AANATQ16613 207 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 PLPPR1Q8TBJ4 325 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 MND1Q9BWT6 205 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 CDCA4Q9BXL8 241 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 TAS2R3Q9NYW6 316 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 ST3GAL6Q9Y274 331 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 LSM2Q9Y333 95 aaKnown RBP19.96■□□□□ 0.79
UPF3A-209ENST00000492270 TRRAPQ9Y4A5 3859 aa19.96■□□□□ 0.79
UPF3A-209ENST00000492270 MEGF11A6BM72 1044 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 RAB13P51153 203 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 RBM11P57052 281 aaKnown RBP19.95■□□□□ 0.78
UPF3A-209ENST00000492270 FAM189A2Q15884 450 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 RNLSQ5VYX0 342 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 HEPN1Q6WQI6 88 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 OSR2Q8N2R0 312 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 MYDGFQ969H8 173 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 MUL1Q969V5 352 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 S100A13Q99584 98 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 CLEC7AQ9BXN2 247 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 ANKRD60Q9BZ19 345 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 SCN3BQ9NY72 215 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 KIF25Q9UIL4 384 aa19.95■□□□□ 0.78
UPF3A-209ENST00000492270 CHST1O43916 411 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 CSTBP04080 98 aaKnown RBP19.94■□□□□ 0.78
UPF3A-209ENST00000492270 SLC35A2P78381 396 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 BDH1Q02338 343 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 C17orf58Q2M2W7 97 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 SLC22A6Q4U2R8 563 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 UTF1Q5T230 341 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 IZUMO2Q6UXV1 221 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 JAGN1Q8N5M9 183 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 OR13A1Q8NGR1 328 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 FOXRED1Q96CU9 486 aaPredicted RBP19.94■□□□□ 0.78
UPF3A-209ENST00000492270 MALSU1Q96EH3 234 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 C16orf95Q9H693 158 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 FOXJ3Q9UPW0 622 aa19.94■□□□□ 0.78
UPF3A-209ENST00000492270 GEMIN2O14893 280 aaKnown RBP19.93■□□□□ 0.78
UPF3A-209ENST00000492270 TSPAN9O75954 239 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 GLP1RP43220 463 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 PROK1P58294 105 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 IRF3Q14653 427 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 NHLRC3Q5JS37 347 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 RSBN1Q5VWQ0 802 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-209ENST00000492270 SLC35E4Q6ICL7 350 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 SUMF2Q8NBJ7 301 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 OR4P4Q8NGL7 312 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 ZNF286AQ9HBT8 521 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 HILPDAQ9Y5L2 63 aa19.93■□□□□ 0.78
UPF3A-209ENST00000492270 MEIKINA0A087WXM9 373 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 VGLL3A8MV65 326 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 OR7C1O76099 320 aaPredicted RBP19.92■□□□□ 0.78
UPF3A-209ENST00000492270 MED22Q15528 200 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 FAM27D1Q5T7N8 215 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 ABHD12Q8N2K0 398 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 NDNFQ8TB73 568 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 DPCDQ9BVM2 203 aaPredicted RBP19.92■□□□□ 0.78
UPF3A-209ENST00000492270 VCX3BQ9H321 246 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 OR6C3Q9NZP0 311 aa19.92■□□□□ 0.78
UPF3A-209ENST00000492270 MRPS28Q9Y2Q9 187 aaKnown RBP19.92■□□□□ 0.78
UPF3A-209ENST00000492270 TRAV39A0A0B4J263 110 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 ZNF729A6NN14 1252 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-209ENST00000492270 H0YHG0 523 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 CGB3P0DN86 165 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 CGB7P0DN87 165 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 SPHARQ15513 63 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 MINOS1Q5TGZ0 78 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 OR52W1Q6IF63 320 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 BRICD5Q6PL45 260 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 GLIPR1L1Q6UWM5 242 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 CCBE1Q6UXH8 406 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-209ENST00000492270 LYPD6Q86Y78 171 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 OR4D6Q8NGJ1 314 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 CITED1Q99966 193 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 TMED9Q9BVK6 235 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 DUSP21Q9H596 190 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 IFT22Q9H7X7 185 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 SIGLEC9Q9Y336 463 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 TPRKBQ9Y3C4 175 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 MINOS1-NBL1R4GNA1 71 aa19.91■□□□□ 0.78
UPF3A-209ENST00000492270 MAPK3P27361 379 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-209ENST00000492270 GP2P55259 537 aaKnown RBP19.9■□□□□ 0.78
UPF3A-209ENST00000492270 ACSM3Q53FZ2 586 aa19.9■□□□□ 0.78
UPF3A-209ENST00000492270 PRR31Q5SQ13 230 aa19.9■□□□□ 0.78
UPF3A-209ENST00000492270 BARHL1Q9BZE3 327 aa19.9■□□□□ 0.78
UPF3A-209ENST00000492270 ZNF696Q9H7X3 374 aa19.9■□□□□ 0.78
UPF3A-209ENST00000492270 TCF19Q9Y242 345 aa19.9■□□□□ 0.78
UPF3A-209ENST00000492270 KBTBD11-OT1A0A1B0GTJ5 212 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 ZNF780AO75290 641 aaPredicted RBP19.89■□□□□ 0.77
UPF3A-209ENST00000492270 GTF2F2P13984 249 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 ATAD3CQ5T2N8 411 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 AWAT2Q6E213 333 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 UNQ9370/PRO34162Q6UXP9 181 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 TMEM219Q86XT9 240 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 MRGPRDQ8TDS7 321 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 KIRREL1Q96J84 757 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 ABCB10Q9NRK6 738 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 CALYQ9NYX4 217 aa19.89■□□□□ 0.77
UPF3A-209ENST00000492270 RGS10O43665 173 aa19.88■□□□□ 0.77
UPF3A-209ENST00000492270 IGLV1-47P01700 117 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms