RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 SLC9A3R2Q15599 337 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 CDNFQ49AH0 187 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 LDLRAD2Q5SZI1 272 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 KCTD16Q68DU8 428 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 ZNF470Q6ECI4 717 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 EPGNQ6UW88 154 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 VTCN1Q7Z7D3 282 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 TCP10LQ8TDR4 215 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 DDI1Q8WTU0 396 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 NAT14Q8WUY8 206 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 ING5Q8WYH8 240 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 TNFRSF14Q92956 283 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 RNF170Q96K19 258 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 BIRC8Q96P09 236 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 CYP3A43Q9HB55 503 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 UBAP1Q9NZ09 502 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 TFR2Q9UP52 801 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 FAM32AQ9Y421 112 aaKnown RBP2.29□□□□□ -2.04
USP48-209ENST00000487880 PLXNB1O43157 2135 aa2.29□□□□□ -2.04
USP48-209ENST00000487880 XRN1Q8IZH2 1706 aaKnown RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 NRKQ7Z2Y5 1582 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 CPS1P31327 1500 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 CRB1P82279 1406 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 EDC4Q6P2E9 1401 aaKnown RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 PVALEFA0A1B0GWK0 134 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 C15orf65H3BRN8 121 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 M6PRP20645 277 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 S100A5P33763 92 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 PHBP35232 272 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 RPL5P46777 297 aaKnown RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 MAGOHP61326 146 aaKnown RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 SLC35B1P78383 322 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 LAMTOR4Q0VGL1 99 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 UAP1Q16222 522 aaPredicted RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 AMMECR1LQ6DCA0 310 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 SMARCD3Q6STE5 483 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 LINC00299Q6ZSB3 139 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 LINC00523Q86TU6 105 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 SPATA24Q86W54 205 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 LRRC34Q8IZ02 419 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 RIBC1Q8N443 379 aaPredicted RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 ZNF555Q8NEP9 628 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 OR6K6Q8NGW6 343 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 MAGOHBQ96A72 148 aaKnown RBP2.28□□□□□ -2.04
USP48-209ENST00000487880 ANKRD36BP1Q96IX9 119 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 CAPZA3Q96KX2 299 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 CCDC42Q96M95 316 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 KIR3DX1Q9H7L2 352 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 PARVGQ9HBI0 331 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 CRLF2Q9HC73 371 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 OR2S2Q9NQN1 319 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 CHRAC1Q9NRG0 131 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 ASF1BQ9NVP2 202 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 TMEM38BQ9NVV0 291 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 EURLQ9NYK6 297 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 KIF20BQ96Q89 1820 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 PPLO60437 1756 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 AKAP12Q02952 1782 aa2.28□□□□□ -2.04
USP48-209ENST00000487880 ARHGEF28Q8N1W1 1705 aaKnown RBP2.28□□□□□ -2.05
USP48-209ENST00000487880 PIK3C2AO00443 1686 aa2.28□□□□□ -2.05
USP48-209ENST00000487880 CPDO75976 1380 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 DLG5Q8TDM6 1919 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 ZNF532Q9HCE3 1301 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 SPEF2Q9C093 1822 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 FAM25EA8MYX2 175 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 TMEM114B3SHH9 223 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 MSR1P21757 451 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 GTF2H1P32780 548 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 PSMB2P49721 201 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 RAP1GDS1P52306 607 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 CTAG1AP78358 180 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 BASP1P80723 227 aaKnown RBP2.27□□□□□ -2.05
USP48-209ENST00000487880 RELAQ04206 551 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 TNFRSF9Q07011 255 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 MED21Q13503 144 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 DOC2AQ14183 400 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 TTC32Q5I0X7 151 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 ZNF660Q6AZW8 331 aaPredicted RBP2.27□□□□□ -2.05
USP48-209ENST00000487880 NIPAL1Q6NVV3 410 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 PRNTQ86SH4 94 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 SYCE1Q8N0S2 351 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 ZDHHC22Q8N966 263 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 OR5T3Q8NGG3 340 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 ANGPTL6Q8NI99 470 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 TOP1MTQ969P6 601 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 TMA16Q96EY4 203 aaKnown RBP2.27□□□□□ -2.05
USP48-209ENST00000487880 TSNAXQ99598 290 aaKnown RBP2.27□□□□□ -2.05
USP48-209ENST00000487880 C20orf144Q9BQM9 153 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 SIKE1Q9BRV8 207 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 SPZ1Q9BXG8 430 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 MRPS26Q9BYN8 205 aaKnown RBP2.27□□□□□ -2.05
USP48-209ENST00000487880 DRC3Q9H069 523 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 Q9H521 79 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 DUSP21Q9H596 190 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 ABCB9Q9NP78 766 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 FGFR1OP2Q9NVK5 253 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 FKBP14Q9NWM8 211 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 GID8Q9NWU2 228 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 DNAJC12Q9UKB3 198 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 PRELID1Q9Y255 219 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms