RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CLPXO76031 633 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 HIST1H1DP16402 221 aaKnown RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 GNB3P16520 340 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 TALDO1P37837 337 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 KCNJ3P48549 501 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 EDDM3BP56851 147 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 AESQ08117 197 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 EDDM3AQ14507 147 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 ATXN7L3Q14CW9 347 aaPredicted RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 TMEM69Q5SWH9 247 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 OR4M1Q8NGD0 313 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 PLPPR1Q8TBJ4 325 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 H1FXQ92522 213 aaKnown RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 DIRAS2Q96HU8 199 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 NUDT16L1Q9BRJ7 211 aaKnown RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 ZMAT3Q9HA38 289 aaKnown RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 ETAA1Q9NY74 926 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 PTTG2Q9NZH5 202 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 EXTL2Q9UBQ6 330 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 MRPS7Q9Y2R9 242 aaKnown RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 FUOMA2VDF0 154 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 H7C1Q1 480 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 MFNGO00587 321 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 GPR37O15354 613 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 FOXH1O75593 365 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 CSN2P05814 226 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 ZFP36P26651 326 aaKnown RBP10.14□□□□□ -0.79
SDC1-206ENST00000482879 ERP29P30040 261 aaKnown RBP10.14□□□□□ -0.79
SDC1-206ENST00000482879 TNFSF8P32971 234 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 LCN2P80188 198 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 MADCAM1Q13477 382 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 ARL6IP1Q15041 203 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 ZNF260Q3ZCT1 412 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 KRBOX4Q5JUW0 171 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 OLFML2AQ68BL7 652 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 CNIH2Q6PI25 160 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 BTN2A1Q7KYR7 527 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 TPRX1Q8N7U7 411 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 OR6Q1Q8NGQ2 317 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 DYRK2Q92630 601 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 COQ2Q96H96 371 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 AK3Q9UIJ7 227 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 KCNK7Q9Y2U2 307 aa10.14□□□□□ -0.79
SDC1-206ENST00000482879 FLNAP21333 2647 aaKnown RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 ACANP16112 2415 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 LOC105371242A0A075B767 164 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 TMEM235A6NFC5 223 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 SERPINE3A8MV23 424 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 KIAA1324LA8MWY0 1029 aaPredicted RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 SMAD7O15105 426 aaKnown RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 ECDO95905 644 aaPredicted RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 GSTP1P09211 210 aaKnown RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 CD3GP09693 182 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 MNDAP41218 407 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 GLIPR1P48060 266 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 P2RX3P56373 397 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 TAS2R20P59543 309 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 ARFRP1Q13795 201 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 RSBN1Q5VWQ0 802 aaPredicted RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 CD276Q5ZPR3 534 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 SLC35E4Q6ICL7 350 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 ZNF497Q6ZNH5 498 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 CIARTQ8N365 385 aaPredicted RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 WDFY2Q96P53 400 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 CMSS1Q9BQ75 279 aaKnown RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 DCTN5Q9BTE1 182 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 AUNIPQ9H7T9 357 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 LPAR2Q9HBW0 351 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.13□□□□□ -0.79
SDC1-206ENST00000482879 KIF25Q9UIL4 384 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 ELF5Q9UKW6 265 aaPredicted RBP10.13□□□□□ -0.79
SDC1-206ENST00000482879 CSPG4Q6UVK1 2322 aa10.13□□□□□ -0.79
SDC1-206ENST00000482879 MEIKINA0A087WXM9 373 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 TRBV23-1A0A0A0MS06 115 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 TMEM30CPA0ZSE6 113 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 ODAMA1E959 279 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 A8MXK9 166 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 B4DSR2 109 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 C22orf46C9J442 243 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 CA11O75493 328 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 HLA-DQB1P01920 261 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 MT-ND4P03905 459 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 GNG2P59768 71 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 RPL31P62899 125 aaKnown RBP10.12□□□□□ -0.79
SDC1-206ENST00000482879 MRPS15P82914 257 aaKnown RBP10.12□□□□□ -0.79
SDC1-206ENST00000482879 PAX5Q02548 391 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 MEF2CQ06413 473 aaPredicted RBP10.12□□□□□ -0.79
SDC1-206ENST00000482879 PNLIPRP3Q17RR3 467 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 TMEM249Q2WGJ8 235 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 C11orf91Q3C1V1 193 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 HACD4Q5VWC8 232 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 SNX29P2Q8IUI4 249 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 FAM185AQ8N0U4 392 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 CCDC107Q8WV48 283 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 C1orf159Q96HA4 380 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 HDHD3Q9BSH5 251 aaPredicted RBP10.12□□□□□ -0.79
SDC1-206ENST00000482879 RIMS4Q9H426 269 aaPredicted RBP10.12□□□□□ -0.79
SDC1-206ENST00000482879 CHMP1AQ9HD42 196 aaPredicted RBP10.12□□□□□ -0.79
SDC1-206ENST00000482879 C19orf12Q9NSK7 152 aa10.12□□□□□ -0.79
SDC1-206ENST00000482879 RPUSD1Q9UJJ7 312 aaKnown RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms