RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 INSL4Q14641 139 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 TRAM1Q15629 374 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 MPV17LQ2QL34 196 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 PAN3Q58A45 887 aaKnown RBP14.1□□□□□ -0.15
USP39-208ENST00000455732 KRBOX4Q5JUW0 171 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 MUL1Q969V5 352 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 MRPS24Q96EL2 167 aaKnown RBP14.1□□□□□ -0.15
USP39-208ENST00000455732 GAL3ST2Q9H3Q3 398 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 TNFRSF19Q9NS68 423 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 MRPS28Q9Y2Q9 187 aaKnown RBP14.1□□□□□ -0.15
USP39-208ENST00000455732 SESN1Q9Y6P5 492 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 KIAA2026Q5HYC2 2103 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 MEX3AA1L020 520 aaKnown RBP14.09□□□□□ -0.15
USP39-208ENST00000455732 FAM90A8PA6NJQ4 464 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 UCHL1P09936 223 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 HSMCR30P0CW71 290 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 CPEP16870 476 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 SERPINA2P20848 420 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 MAP2K4P45985 399 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 ATXN7L3Q14CW9 347 aaPredicted RBP14.09□□□□□ -0.15
USP39-208ENST00000455732 AANATQ16613 207 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 SLC22A6Q4U2R8 563 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 FAM27D1Q5T7N8 215 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 ZNF626Q68DY1 528 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 AWAT2Q6E213 333 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 GLIPR1L1Q6UWM5 242 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 ZNF367Q7RTV3 350 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 TRAPPC6BQ86SZ2 158 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 LRRTM1Q86UE6 522 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 DYRK2Q92630 601 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 MGLLQ99685 303 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 MEGF9Q9H1U4 602 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 TCF7L1Q9HCS4 588 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 OR6C3Q9NZP0 311 aa14.09□□□□□ -0.15
USP39-208ENST00000455732 TBL2Q9Y4P3 447 aaKnown RBP14.09□□□□□ -0.15
USP39-208ENST00000455732 MGAM2Q2M2H8 2515 aa14.08□□□□□ -0.15
USP39-208ENST00000455732 A0A1W2PP11 408 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 GEMIN2O14893 280 aaKnown RBP14.08□□□□□ -0.16
USP39-208ENST00000455732 OR7C1O76099 320 aaPredicted RBP14.08□□□□□ -0.16
USP39-208ENST00000455732 RELBQ01201 579 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 TAF9Q16594 264 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 HSD17B12Q53GQ0 312 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 HEPN1Q6WQI6 88 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 CEACAM19Q7Z692 300 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 OR4D6Q8NGJ1 314 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 OR5R1Q8NH85 324 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 C17orf50Q8WW18 174 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 FOXRED1Q96CU9 486 aaPredicted RBP14.08□□□□□ -0.16
USP39-208ENST00000455732 PPIL3Q9H2H8 161 aaKnown RBP14.08□□□□□ -0.16
USP39-208ENST00000455732 TMEM133Q9H2Q1 129 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 ACOT13Q9NPJ3 140 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 GHRLQ9UBU3 117 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 VPREB3Q9UKI3 123 aa14.08□□□□□ -0.16
USP39-208ENST00000455732 BTBD17A6NE02 478 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 POM121CA8CG34 1229 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 HSPB6O14558 160 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 CD37P11049 281 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 MDKP21741 143 aaPredicted RBP14.07□□□□□ -0.16
USP39-208ENST00000455732 OMGP23515 440 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 GABRA5P31644 462 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 LGALS4P56470 323 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 RPS25P62851 125 aaKnown RBP14.07□□□□□ -0.16
USP39-208ENST00000455732 RSBN1Q5VWQ0 802 aaPredicted RBP14.07□□□□□ -0.16
USP39-208ENST00000455732 TMEM91Q6ZNR0 172 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 SUMF2Q8NBJ7 301 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 TMEM203Q969S6 136 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 DPCDQ9BVM2 203 aaPredicted RBP14.07□□□□□ -0.16
USP39-208ENST00000455732 YTHDF1Q9BYJ9 559 aaKnown RBP14.07□□□□□ -0.16
USP39-208ENST00000455732 BARHL1Q9BZE3 327 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 SPACA1Q9HBV2 294 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 C1RLQ9NZP8 487 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 ZNF581Q9P0T4 197 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 RCC2Q9P258 522 aaKnown RBP14.07□□□□□ -0.16
USP39-208ENST00000455732 MMP24Q9Y5R2 645 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 TRRAPQ9Y4A5 3859 aa14.07□□□□□ -0.16
USP39-208ENST00000455732 IGHV2-26A0A0B4J1V2 119 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A10PA6NDY2 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A18PA6NE21 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A16PA6NEW6 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A20PA6NIJ5 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A7PA6NKC0 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 ZNF729A6NN14 1252 aaPredicted RBP14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A22PA8MWA6 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A12PA8MX19 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A5PA8MXJ8 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A23PA8MXZ1 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 GPR137BO60478 399 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 MMP23AO75900 390 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 NDUFA7O95182 113 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 ARG1P05089 322 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A15PP0C7V4 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A13PP0C7W8 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A14PP0C7W9 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 FAM90A24PP0C7X0 464 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 UBBP0CG47 229 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 SRMP19623 302 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 C1orf100Q5SVJ3 147 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 GLT8D1Q68CQ7 371 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 OR52W1Q6IF63 320 aa14.06□□□□□ -0.16
USP39-208ENST00000455732 SHISA2Q6UWI4 295 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms