RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GNPNAT1Q96EK6 184 aaPredicted RBP10.29□□□□□ -0.76
MSH6-204ENST00000445503 TWSG1Q9GZX9 223 aa10.29□□□□□ -0.76
MSH6-204ENST00000445503 RNF150Q9ULK6 438 aa10.29□□□□□ -0.76
MSH6-204ENST00000445503 CBY1Q9Y3M2 126 aa10.29□□□□□ -0.76
MSH6-204ENST00000445503 ZNF407Q9C0G0 2248 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 ICE1Q9Y2F5 2266 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 KIAA2026Q5HYC2 2103 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 KIR2DS1A0A191URI9 304 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 SMCO3A2RU48 225 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 LY86O95711 162 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 HBE1P02100 147 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 APLNRP35414 380 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 KIR2DS4P43632 304 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 DEFA6Q01524 100 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 KIR2DS1Q14954 304 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 TMEM252Q8N6L7 170 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 CYB561D1Q8N8Q1 229 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 OR2H1Q9GZK4 316 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 PMS2P1A4D2B8 440 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 DLK1P80370 383 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 NSUN5P2Q63ZY6 315 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 LYPD6Q86Y78 171 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 ZNF709Q8N972 641 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 RAB39BQ96DA2 213 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 GAB2Q9UQC2 676 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 DENND4AQ7Z401 1863 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 ZNF705GA8MUZ8 300 aaPredicted RBP10.28□□□□□ -0.76
MSH6-204ENST00000445503 ZNF587BE7ETH6 402 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 PTGDSP41222 190 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 CCL20P78556 96 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 ZNF787Q6DD87 383 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 OR2T2Q6IF00 324 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 CALHM1Q8IU99 346 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 TM2D1Q9BX74 207 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 SLC39A9Q9NUM3 307 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 B4GALT7Q9UBV7 327 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 V9GYS6 101 aa10.28□□□□□ -0.76
MSH6-204ENST00000445503 PATE3B3GLJ2 98 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 C3orf80F5H4A9 247 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 CD5P06127 495 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 SMIM6P0DI80 62 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 FAM209BQ5JX69 171 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 ZDHHC23Q8IYP9 409 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 ZNF808Q8N4W9 903 aaPredicted RBP10.27□□□□□ -0.76
MSH6-204ENST00000445503 RPUSD4Q96CM3 377 aaKnown RBP10.27□□□□□ -0.76
MSH6-204ENST00000445503 TVP23CQ96ET8 276 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 ABI3Q9P2A4 366 aa10.27□□□□□ -0.76
MSH6-204ENST00000445503 A0A0U1RQK1 487 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 PQLC2LA1A4F0 135 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 TRDCB7Z8K6 153 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 DEGS1O15121 323 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 DUSP3P51452 185 aaPredicted RBP10.27□□□□□ -0.77
MSH6-204ENST00000445503 RBM11P57052 281 aaKnown RBP10.27□□□□□ -0.77
MSH6-204ENST00000445503 SPEM2Q0P670 501 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 SSX2Q16385 188 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 SPINK14Q6IE38 97 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 NTNG2Q96CW9 530 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 SDSLQ96GA7 329 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 THOC3Q96J01 351 aaKnown RBP10.27□□□□□ -0.77
MSH6-204ENST00000445503 OR5B12Q96R08 314 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 SMOC1Q9H4F8 434 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 COA4Q9NYJ1 87 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 IFNA1P01562 189 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 GRPP07492 148 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 RPS2P15880 293 aaKnown RBP10.27□□□□□ -0.77
MSH6-204ENST00000445503 CCL1P22362 96 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 TRIM61Q5EBN2 209 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 LIME1Q9H400 295 aa10.27□□□□□ -0.77
MSH6-204ENST00000445503 GAR1Q9NY12 217 aaKnown RBP10.27□□□□□ -0.77
MSH6-204ENST00000445503 IGKV1-27A0A075B6S5 117 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 PCOLCEQ15113 449 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 MAJINQ3KP22 176 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 ZNF610Q8N9Z0 462 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 HS3ST3B1Q9Y662 390 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 IGKV1-12A0A0C4DH73 117 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 A0A0G2JMM0 328 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 A0A1W2PPB8 328 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 A0A1W2PRS3 328 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 IGSF23A1L1A6 192 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 KIR3DP1A8MWS1 328 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 ZIC3O60481 467 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 DFFBO76075 338 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 IGKV1D-12P01611 117 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 RND3P61587 244 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 CCDC54Q8NEL0 328 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 RHBDD1Q8TEB9 315 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 NINJ1Q92982 152 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 PCED1AQ9H1Q7 454 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 TMPRSS5Q9H3S3 457 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 PLA2G3Q9NZ20 509 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 IL36RNQ9UBH0 155 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 CACNG5Q9UF02 275 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 BOKQ9UMX3 212 aaPredicted RBP10.26□□□□□ -0.77
MSH6-204ENST00000445503 VCANP13611 3396 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 TRIOO75962 3097 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 SCAF4O95104 1147 aaKnown RBP10.26□□□□□ -0.77
MSH6-204ENST00000445503 CST2P09228 141 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 RFPL3SP0C7P2 107 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 FABP4P15090 132 aa10.26□□□□□ -0.77
MSH6-204ENST00000445503 S100A12P80511 92 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms