RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 UBL4BQ8N7F7 174 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR1L8Q8NGR8 309 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF524Q96C55 264 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ACY3Q96HD9 319 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DIRAS2Q96HU8 199 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 BIRC8Q96P09 236 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SMIM14Q96QK8 99 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 VSIRQ9H7M9 311 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DDX31Q9H8H2 851 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 HEXA-AS1Q9H8Q6 139 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC7A10Q9NS82 523 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SPTBN4Q9H254 2564 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 NRCAMQ92823 1304 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ARHGEF28Q8N1W1 1705 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DCCP43146 1447 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 IGHV3OR16-9A0A0B4J2B5 98 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR6C6A6NF89 314 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 PPP5D1E7EU14 171 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM72CH0Y354 149 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR7C1O76099 320 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 MT-CO2P00403 227 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 GUSBP08236 651 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SCGB1C2P0DMR2 95 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 IFI30P13284 250 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CXCL3P19876 107 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 HTR1EP28566 365 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC25A1P53007 311 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TPI1P60174 286 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SNAP25P60880 206 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF876PQ49A33 203 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM72AQ5TYM5 149 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM215Q68D42 235 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM72DQ6L9T8 149 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SCGB1D4Q6XE38 83 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TMPPEQ6ZT21 453 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM72BQ86X60 149 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR9I1Q8NGQ6 314 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10K1Q8NGX5 313 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SCGB1C1Q8TD33 95 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SIGLEC12Q96PQ1 595 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TBX5Q99593 518 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CHST5Q9GZS9 411 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 Q9H3A6 140 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FGF22Q9HCT0 170 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 HEBP1Q9NRV9 189 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 MARCH5Q9NX47 278 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SIGLEC7Q9Y286 467 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 UFC1Q9Y3C8 167 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 INSIG2Q9Y5U4 225 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 MUC6Q6W4X9 2439 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 RIMS2Q9UQ26 1411 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TEX50A0A1B0GTY4 177 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 NDUFC2-KCTD14E9PQ53 114 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 RGS5O15539 181 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TNFSF13O75888 250 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 S1PR2O95136 353 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DUSP14O95147 198 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 IGKV1D-16P01601 117 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 IDO1P14902 403 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF17P17021 662 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CRABP1P29762 137 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 P2RY4P51582 365 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 GNG3P63215 75 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC7A9P82251 487 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CD300CQ08708 224 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 HERPUD1Q15011 391 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF630Q2M218 657 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CEACAM16Q2WEN9 425 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF658BQ4V348 819 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CENPWQ5EE01 88 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM42Q69YG0 159 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CXCL17Q6UXB2 119 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 C1QL2Q7Z5L3 287 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SKA2Q8WVK7 121 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 RMND5BQ96G75 393 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 C18orf12Q96KH6 178 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR2V2Q96R30 315 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 LINC01587Q99440 93 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 PFDN5Q99471 154 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TRIM15Q9C019 465 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OR51I2Q9H344 312 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DHRS4-AS1Q9P1J3 65 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DEC1Q9P2X7 70 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DOCK7Q96N67 2140 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 UGGT2Q9NYU1 1516 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF729A6NN14 1252 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 MPTX1A8MV57 137 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 H0Y9J4 135 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 COPEO14579 308 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC31A2O15432 143 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TOMM40O96008 361 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ZSCAN5DPP0CG00 497 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 CRABP2P29373 138 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 PRDX4Q13162 271 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 FHL1Q13642 323 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 MPPED2Q15777 294 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM179BQ7Z7N9 219 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 Q8NBF4 154 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 OR4S2Q8NH73 311 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10D3Q8NH80 312 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms