RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 PARPBPQ9NWS1 579 aa14.11□□□□□ -0.15
CLCNKA-203ENST00000439316 SHANK1Q9Y566 2161 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 NKX2-6A6NCS4 301 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A10PA6NDY2 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A18PA6NE21 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A16PA6NEW6 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A20PA6NIJ5 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A8PA6NJQ4 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A7PA6NKC0 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A22PA8MWA6 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A12PA8MX19 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A5PA8MXJ8 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A23PA8MXZ1 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 UMAD1C9J7I0 102 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 ZNF587BE7ETH6 402 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 OR7C1O76099 320 aaPredicted RBP14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A15PP0C7V4 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A13PP0C7W8 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A14PP0C7W9 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM90A24PP0C7X0 464 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 NOVA1P51513 510 aaKnown RBP14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 RHEBQ15382 184 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 IGSF11Q5DX21 431 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 TMEM182Q6ZP80 229 aaPredicted RBP14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 OR2C3Q8N628 320 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 TMEM56Q96MV1 263 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 PRDM14Q9GZV8 571 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 P4HTMQ9NXG6 502 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 TMEM56-RWDD3S4R434 201 aa14.1□□□□□ -0.15
CLCNKA-203ENST00000439316 RPL36A-HNRNPH2H7BZ11 118 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 M0R036 132 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 UBE2CO00762 179 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 PITX3O75364 302 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 RFPL3SP0C7P2 107 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 PPP1CCP36873 323 aaKnown RBP14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 NPBWR2P48146 333 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 RND3P61587 244 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 SLC25A26Q70HW3 274 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 DPPA2Q7Z7J5 298 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 ZNF561Q8N587 486 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 SLC35B3Q9H1N7 401 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 RYDENQ9NUL5 291 aaKnown RBP14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 PCSK5Q92824 1860 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 PTPRBP23467 1997 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 A0A1W2PPH5 198 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 IGSF23A1L1A6 192 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 A6NLC8 198 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 GNRHRP30968 328 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 CLDN15P56746 228 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 ZNF266Q14584 549 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 SRSF7Q16629 238 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 COLCA1Q6ZS62 124 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM213BQ8TBF2 198 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 EXTL1Q92935 676 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 ABHD14BQ96IU4 210 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 GPR87Q9BY21 358 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 FBXO7Q9Y3I1 522 aa14.09□□□□□ -0.15
CLCNKA-203ENST00000439316 FAM24AA6NFZ4 105 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 C21orf140B9A014 251 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 NKX2-1P43699 371 aaPredicted RBP14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 Q0VFX4 171 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 EIF2S3LQ2VIR3 472 aaKnown RBP14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 TBC1D26Q86UD7 250 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 OR1J1Q8NGS3 322 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 ISOC2Q96AB3 205 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 SPIN2AQ99865 258 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 SPIN2BQ9BPZ2 258 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 C20orf24Q9BUV8 137 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 KCNJ16Q9NPI9 418 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 SLC7A10Q9NS82 523 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 ATPIF1Q9UII2 106 aa14.08□□□□□ -0.16
CLCNKA-203ENST00000439316 PRSS44E7EML9 344 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 CYTIPO60759 359 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 SMIM6P0DI80 62 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 DAOP14920 347 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 RAB5AP20339 215 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 TGIF1Q15583 401 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 NRN1LQ496H8 165 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 WIPI1Q5MNZ9 446 aaPredicted RBP14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 SELENOHQ8IZQ5 122 aaKnown RBP14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 CPEB3Q8NE35 698 aaKnown RBP14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 OR8G5Q8NG78 346 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 TMEM45BQ96B21 275 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 SMDT1Q9H4I9 107 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 Q9N2K0 584 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 MED13Q9UHV7 2174 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 SPTBN2O15020 2390 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 MED19A0JLT2 244 aaPredicted RBP14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 NAPSAO96009 420 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 S100A8P05109 93 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 ATP6V0CP27449 155 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 SULT1A1P50225 295 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 ASCL1P50553 236 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 CLINT1Q14677 625 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 BATF2Q8N1L9 274 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 SNIP1Q8TAD8 396 aaKnown RBP14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 MALSU1Q96EH3 234 aa14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 FGF23Q9GZV9 251 aaPredicted RBP14.07□□□□□ -0.16
CLCNKA-203ENST00000439316 LYRM2Q9NU23 88 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms