RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LRRC20Q8TCA0 184 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 RTN4IP1Q8WWV3 396 aaPredicted RBP7.15□□□□□ -1.26
USP54-203ENST00000418501 SNX22Q96L94 193 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 FYTTD1Q96QD9 318 aaKnown RBP7.15□□□□□ -1.26
USP54-203ENST00000418501 NAA60Q9H7X0 242 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 LIN7CQ9NUP9 197 aaKnown RBP7.15□□□□□ -1.26
USP54-203ENST00000418501 TMED3Q9Y3Q3 217 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 RFPL4AA6NLU0 287 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 RFPL4AL1F8VTS6 287 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 SPRY3O43610 288 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 NDUFA2O43678 99 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 PPP1R1AQ13522 171 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 ZNF146Q15072 292 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 MSMO1Q15800 293 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 FAM76BQ5HYJ3 339 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 SUN5Q8TC36 379 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 MOB3AQ96BX8 217 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 RRNAD1Q96FB5 475 aaKnown RBP7.15□□□□□ -1.26
USP54-203ENST00000418501 NMES1Q9C002 83 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 MFFQ9GZY8 342 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 WDR13Q9H1Z4 485 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 UBQLN2Q9UHD9 624 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 WIPI2Q9Y4P8 454 aa7.15□□□□□ -1.26
USP54-203ENST00000418501 CEACAM18A8MTB9 384 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 B9A039 149 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 MGST3O14880 152 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 ZNF735P0CB33 412 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 PIGPP57054 158 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 ZNF154Q13106 437 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 SLC9A3R2Q15599 337 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 TMEM255AQ5JRV8 349 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 TIMD4Q96H15 378 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 ZNF230Q9UIE0 474 aaPredicted RBP7.15□□□□□ -1.27
USP54-203ENST00000418501 RIF1Q5UIP0 2472 aaKnown RBP7.15□□□□□ -1.27
USP54-203ENST00000418501 ABCD4O14678 606 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 DUSP1P28562 367 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 UBA52P62987 128 aaKnown RBP7.15□□□□□ -1.27
USP54-203ENST00000418501 FAM27E3Q08E93 113 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 DMRTC1Q5HYR2 192 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 SLC51BQ86UW2 128 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 OR4D10Q8NGI6 311 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 SECTM1Q8WVN6 248 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 IL1F10Q8WWZ1 152 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 AIFM2Q9BRQ8 373 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 VSIG4Q9Y279 399 aa7.15□□□□□ -1.27
USP54-203ENST00000418501 IGKV1-12A0A0C4DH73 117 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 TUBAL3A6NHL2 446 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 FOXI3A8MTJ6 420 aaPredicted RBP7.14□□□□□ -1.27
USP54-203ENST00000418501 ATP6V1G2-DDX39BF2Z307 99 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 GPR137BO60478 399 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 OR2H2O95918 312 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PPYP01298 95 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 IGKV1D-12P01611 117 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 MUC1P15941 1255 aaPredicted RBP7.14□□□□□ -1.27
USP54-203ENST00000418501 MPV17P39210 176 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 RAB7AP51149 207 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 ZNF808Q8N4W9 903 aaPredicted RBP7.14□□□□□ -1.27
USP54-203ENST00000418501 MEGF10Q96KG7 1140 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 ZNF665Q9H7R5 613 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 BORCS7-ASMTA0A0B4J1R7 106 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 hCG_1809904A0A1W2PP81 198 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 A0A1W2PPE2 198 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 A0A1W2PR64 198 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 A0A1W2PRV1 198 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 ZNF503-AS2A6NEH8 195 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 OR2A4O95047 310 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 HLA-GP17693 338 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PSMB6P28072 239 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 RND3P61587 244 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 ACP7Q6ZNF0 438 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 ZNF546Q86UE3 836 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 OR2A7Q96R45 310 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 GSKIPQ9P0R6 139 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 OR2W1Q9Y3N9 320 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 RNF115Q9Y4L5 304 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PTPRBP23467 1997 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 TRGV10A0A0A0MS01 117 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 OR2AT4A6NND4 320 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 FAM90A27PA6NNH2 459 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 HSPB6O14558 160 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 TAAR5O14804 337 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PRDX2P32119 198 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 CFHR2P36980 270 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 NPBWR2P48146 333 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PRSS12P56730 875 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 S100A10P60903 97 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 KRBOX4Q5JUW0 171 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 OR10V1Q8NGI7 309 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 CD300LFQ8TDQ1 290 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 LURAP1Q96LR2 239 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 SLC25A31Q9H0C2 315 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 ARL6Q9H0F7 186 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 FAM234AQ9H0X4 552 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PPP1R3CQ9UQK1 317 aa7.14□□□□□ -1.27
USP54-203ENST00000418501 PHF1O43189 567 aaPredicted RBP7.13□□□□□ -1.27
USP54-203ENST00000418501 HPXP02790 462 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 VSIG10L2P0DP72 767 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 CTRB1P17538 263 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 APOBEC3AP31941 199 aaPredicted RBP7.13□□□□□ -1.27
USP54-203ENST00000418501 CTRB2Q6GPI1 263 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms