RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZFPL1O95159 310 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 CGB3P0DN86 165 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 CGB7P0DN87 165 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 SOX2P48431 317 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 RASSF2P50749 326 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 PRRX1P54821 245 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 GALEQ14376 348 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 PIGYQ3MUY2 71 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 PAN3Q58A45 887 aaKnown RBP9.19□□□□□ -0.94
USP4-204ENST00000416417 ZNF691Q5VV52 312 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 FAM53AQ6NSI3 398 aaPredicted RBP9.19□□□□□ -0.94
USP4-204ENST00000416417 C11orf87Q6NUJ2 197 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 CBR4Q8N4T8 237 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 OR4X2Q8NGF9 303 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 OR51A2Q8NGJ7 313 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 UBALD1Q8TB05 177 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 MRGPRDQ8TDS7 321 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 TSEN15Q8WW01 171 aaKnown RBP9.19□□□□□ -0.94
USP4-204ENST00000416417 TRUB1Q8WWH5 349 aaKnown RBP9.19□□□□□ -0.94
USP4-204ENST00000416417 TOMM40LQ969M1 308 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 CALYQ9NYX4 217 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 ORC6Q9Y5N6 252 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 KBTBD11-OT1A0A1B0GTJ5 212 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 ZNF729A6NN14 1252 aaPredicted RBP9.18□□□□□ -0.94
USP4-204ENST00000416417 GABRPO00591 440 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 SULT1B1O43704 296 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 DBTP11182 482 aaKnown RBP9.18□□□□□ -0.94
USP4-204ENST00000416417 GABRB1P18505 474 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 CEACAM3P40198 252 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 GTF2A1P52655 376 aaPredicted RBP9.18□□□□□ -0.94
USP4-204ENST00000416417 HES1Q14469 280 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 KIAA2026Q5HYC2 2103 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 DEFB121Q5J5C9 76 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 SLC25A30Q5SVS4 291 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 ETV3LQ6ZN32 361 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 SAXO1Q8IYX7 474 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 DRAM1Q8N682 238 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 CHST4Q8NCG5 386 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 OR5AK2Q8NH90 309 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 TNFAIP8L1Q8WVP5 186 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 RGP1Q92546 391 aaPredicted RBP9.18□□□□□ -0.94
USP4-204ENST00000416417 RPEQ96AT9 228 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 ORAI1Q96D31 301 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 ZNF649Q9BS31 505 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 FAM192AQ9GZU8 254 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 TAS2R4Q9NYW5 299 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 IDI2-AS1Q9NZ38 188 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 DHDHQ9UQ10 334 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 PSG11Q9UQ72 335 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 GMPPBQ9Y5P6 360 aa9.18□□□□□ -0.94
USP4-204ENST00000416417 A0A087X0M5 115 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 A0A1B0GX30 115 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 J3QR06 171 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 ATP5HO75947 161 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 CSN2P05814 226 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 CCDC159P0C7I6 412 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 SSTR5P35346 364 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 MNDAP41218 407 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 ALDH3A2P51648 485 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 ARHGDIBP52566 201 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 SLC35A2P78381 396 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 MEDAGQ5VYS4 303 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 XAF1Q6GPH4 301 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 SERPINA12Q8IW75 414 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 OR51T1Q8NGJ9 327 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 OR5D14Q8NGL3 314 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 OR9G1Q8NH87 305 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 CNIH3Q8TBE1 160 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 DUX3Q96PT4 197 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 GPER1Q99527 375 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 ERVK13-1Q9NX77 482 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 OR6C3Q9NZP0 311 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 MOB4Q9Y3A3 225 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 HSPE1-MOB4S4R3N1 261 aa9.17□□□□□ -0.94
USP4-204ENST00000416417 IGHV3-72A0A0B4J1Y9 119 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 A0A1W2PPI3 338 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 PSMB11A5LHX3 300 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A18PA6NE21 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A16PA6NEW6 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A20PA6NIJ5 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 LINC01548A6NM66 108 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A9PA6NNJ1 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A12PA8MX19 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A5PA8MXJ8 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 CDRT1O95170 752 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 HTR3BO95264 441 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A15PP0C7V4 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A13PP0C7W8 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A14PP0C7W9 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM90A24PP0C7X0 464 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 FAM106CPP0CH98 169 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 TMEM11P17152 192 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 REG1BP48304 166 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 MTNR1BP49286 362 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 RSBN1Q5VWQ0 802 aaPredicted RBP9.16□□□□□ -0.94
USP4-204ENST00000416417 OSR2Q8N2R0 312 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 PARP16Q8N5Y8 322 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 LINC00482Q8N8I6 264 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 OR52I1Q8NGK6 324 aa9.16□□□□□ -0.94
USP4-204ENST00000416417 SLC29A1Q99808 456 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms