RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 GLYATL2Q8WU03 294 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 RDH5Q92781 318 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 RBPMSQ93062 196 aaKnown RBP17.11■□□□□ 0.33
USP39-204ENST00000409766 AQP10Q96PS8 301 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 ZNF71Q9NQZ8 489 aaPredicted RBP17.11■□□□□ 0.33
USP39-204ENST00000409766 SDHAF2Q9NX18 166 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 SLC34A2O95436 690 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 MPV17P39210 176 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 KCNJ3P48549 501 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 ZNF154Q13106 437 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 Q6P435 159 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 OPN3Q9H1Y3 402 aaPredicted RBP17.11■□□□□ 0.33
USP39-204ENST00000409766 DNAJB11Q9UBS4 358 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 PROCRQ9UNN8 238 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 POLDIP2Q9Y2S7 368 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 PRR14LQ5THK1 2151 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 IGKV1-6A0A0C4DH72 117 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 BET1O15155 118 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 ZNF250P15622 560 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 GNRHRP30968 328 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 FAM74A1Q5RGS3 127 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 UNQ6126/PRO20091Q6UXV3 157 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 LIAT1Q6ZQX7 453 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 Q8IYB0 196 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 CCDC71LQ8N9Z2 235 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 STOML3Q8TAV4 291 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 MSI2Q96DH6 328 aaKnown RBP17.1■□□□□ 0.33
USP39-204ENST00000409766 CNTNAP3BQ96NU0 1288 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 CNTNAP3Q9BZ76 1288 aa17.1■□□□□ 0.33
USP39-204ENST00000409766 TUSC2O75896 110 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 DIRAS3O95661 229 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 IGLV1-44P01699 117 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 CTXN2P0C2S0 81 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 CECR9P0C854 216 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 S100A10P60903 97 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 P2RY6Q15077 328 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 ZNF880Q6PDB4 577 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 C18orf12Q96KH6 178 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 H0YL77 283 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 DEGS1O15121 323 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 GLI4P10075 376 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 NUP62P37198 522 aaPredicted RBP17.09■□□□□ 0.33
USP39-204ENST00000409766 LDLRAD3Q86YD5 345 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 RBMXL3Q8N7X1 1067 aaKnown RBP17.09■□□□□ 0.33
USP39-204ENST00000409766 NRIP2Q9BQI9 281 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 SHARPINQ9H0F6 387 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 OBP2BQ9NPH6 170 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 CYTL1Q9NRR1 136 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 PFDN2Q9UHV9 154 aa17.09■□□□□ 0.33
USP39-204ENST00000409766 ARID1AO14497 2285 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 K7EM74 188 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 CDIPTO14735 213 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 MPPED1O15442 326 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 PGA5P0DJD9 388 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 ZNF44P15621 663 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 OR8G1Q15617 311 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 LYZL2Q7Z4W2 148 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 CCDC28AQ8IWP9 274 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 FAM185AQ8N0U4 392 aa17.08■□□□□ 0.33
USP39-204ENST00000409766 TMEM210A6NLX4 147 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 H7C1Q1 480 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 SHOXO15266 292 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 NAAAQ02083 359 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 SNTB1Q13884 538 aaKnown RBP17.08■□□□□ 0.32
USP39-204ENST00000409766 PAN3Q58A45 887 aaKnown RBP17.08■□□□□ 0.32
USP39-204ENST00000409766 PCSK4Q6UW60 755 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 LGI3Q8N145 548 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 OR8G5Q8NG78 346 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 TP53RKQ96S44 253 aa17.08■□□□□ 0.32
USP39-204ENST00000409766 PURGQ9UJV8 347 aaKnown RBP17.08■□□□□ 0.32
USP39-204ENST00000409766 PHF1O43189 567 aaPredicted RBP17.07■□□□□ 0.32
USP39-204ENST00000409766 RCC1P18754 421 aaPredicted RBP17.07■□□□□ 0.32
USP39-204ENST00000409766 TUBG1P23258 451 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 BEND4Q6ZU67 534 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 BHLHA15Q7RTS1 189 aaPredicted RBP17.07■□□□□ 0.32
USP39-204ENST00000409766 FOXRED2Q8IWF2 684 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 SNIP1Q8TAD8 396 aaKnown RBP17.07■□□□□ 0.32
USP39-204ENST00000409766 LHFPL5Q8TAF8 219 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 TUBG2Q9NRH3 451 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 TMEM100Q9NV29 134 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 TINAGQ9UJW2 476 aa17.07■□□□□ 0.32
USP39-204ENST00000409766 IGKV1D-13A0A0B4J2D9 117 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 C3orf85A0A1B0GTC6 90 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 OR5H1A6NKK0 313 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 MLNRO43193 412 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 DEDDO75618 318 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 OR2H2O95918 312 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 IGKV1-13P0DP09 117 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 RND3P61587 244 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 ZNF146Q15072 292 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 SECTM1Q8WVN6 248 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 SLC5A7Q9GZV3 580 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 TREM2Q9NZC2 230 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 FAM215AQ9Y5M1 114 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 IGHV1-18A0A0C4DH31 117 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 IGHV3-64DA0A0J9YX35 117 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 SLC33A1O00400 549 aaPredicted RBP17.06■□□□□ 0.32
USP39-204ENST00000409766 GRPP07492 148 aa17.06■□□□□ 0.32
USP39-204ENST00000409766 ACAA1P09110 424 aaPredicted RBP17.06■□□□□ 0.32
USP39-204ENST00000409766 TPT1P13693 172 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms