RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PRICKLE4Q2TBC4 344 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 EMC4Q5J8M3 183 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 SLC25A40Q8TBP6 338 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 ANAPC13Q9BS18 74 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 PLEKHF2Q9H8W4 249 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 NOX4Q9NPH5 578 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 PLSCR3Q9NRY6 295 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 DMRT1Q9Y5R6 373 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 A0A0G2JMZ2 1700 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 LRRC37A2A6NM11 1700 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM212A6NML5 194 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF785A8K8V0 405 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 HRASP01112 189 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 KRASP01116 189 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 DLX1P56177 255 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 BPIFB3P59826 476 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 PNRC1Q12796 327 aaPredicted RBP6.42□□□□□ -1.38
SCN9A-202ENST00000409435 HLA-DRB5Q30154 266 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 CXorf66Q5JRM2 361 aaPredicted RBP6.42□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF626Q68DY1 528 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 SLAMF6Q96DU3 332 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 PRO3102Q9H379 93 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 PIPOXQ9P0Z9 390 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 A0A087WUJ7 227 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 P2RY10O00398 339 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 GYPAP02724 150 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 CYHR1Q6ZMK1 362 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 NMNAT3Q96T66 252 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 DCAF13Q9NV06 445 aaKnown RBP6.42□□□□□ -1.38
SCN9A-202ENST00000409435 OR5G3P0C626 314 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 SLC25A4P12235 298 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 HOXB1P14653 301 aaPredicted RBP6.42□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF91Q05481 1191 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 NHLRC1Q6VVB1 395 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM116Q8NCL8 245 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 OR4B1Q8NGF8 309 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 OR51S1Q8NGJ8 323 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 OR52N1Q8NH53 320 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM230Q96A57 120 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 TBX15Q96SF7 602 aa6.42□□□□□ -1.38
SCN9A-202ENST00000409435 TRDV1A0A1B0GX56 115 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 E9PQ18 207 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 NDUFA2O43678 99 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 NEURL1O76050 574 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 HTR1DP28221 377 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 RBM11P57052 281 aaKnown RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 GNG3P63215 75 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF85Q03923 595 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 RELQ04864 619 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF385CQ66K41 422 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 BATF2Q8N1L9 274 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 OR10AD1Q8NGE0 317 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 TIMP4Q99727 224 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 GORASP2Q9H8Y8 452 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 PSORS1C1Q9UIG5 152 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 WSB1Q9Y6I7 421 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 IGHV1-69-2A0A0G2JMI3 117 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 MAP1LC3B2A6NCE7 125 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 PRSS1P07477 247 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 FAM106CPP0CH98 169 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 PTHLHP12272 177 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 HINT1P49773 126 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 DTWD1Q8N5C7 304 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ARIH2OSQ8N7S6 290 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 C17orf47Q8NEP4 570 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 BCL2L2Q92843 193 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 MAP1LC3BQ9GZQ8 125 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 DUSP21Q9H596 190 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF430Q9H8G1 570 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 UQCR10Q9UDW1 63 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 SLC23A1Q9UHI7 598 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 FOXS1O43638 330 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 CD33P20138 364 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 OR5R1Q8NH85 324 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 MOGAT1Q96PD6 335 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 JAM3Q9BX67 310 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 SLC22A13Q9Y226 551 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ZFP30Q9Y2G7 519 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 TRPM6Q9BX84 2022 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 TCRBV5S1A1TA0A578 114 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 SERPINE3A8MV23 424 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 B4DEV8 164 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 CCL2P13500 99 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF133P52736 654 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 NSUN5P1Q3KNT7 163 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ZPLD1Q8TCW7 415 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 MSL2Q9HCI7 577 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 COL4A1P02462 1669 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 A0A1W2PQD3 144 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 SNNO75324 88 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 DXOO77932 396 aaKnown RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 CD200P41217 278 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 NPY4RP50391 375 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 SAXO2Q658L1 398 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 FDX2Q6P4F2 183 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 ADGRE4PQ86SQ3 457 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 LINC00518Q8N0U6 118 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 PELI3Q8N2H9 469 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 WDR31Q8NA23 367 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 C1orf162Q8NEQ5 155 aaPredicted RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms