RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 OR2D2Q9H210 308 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 RNF7Q9UBF6 113 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 MRM2Q9UI43 246 aaKnown RBP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TUBD1Q9UJT1 453 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 A0A1W2PS18 150 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 NXPH3O95157 252 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 PI3P19957 117 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 HNF1AP20823 631 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 FCARP24071 287 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 HOXA4Q00056 320 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 GUCA2AQ02747 115 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SAMD13Q5VXD3 122 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 C10orf113Q5VZT2 155 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TBC1D26Q86UD7 250 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 LRRC29Q8WV35 223 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SCNM1Q9BWG6 230 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 NPTNQ9Y639 398 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SOX21Q9Y651 276 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 A0A1B0GW15 77 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SPRY1O43609 319 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 HPXP02790 462 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 BCL2P10415 239 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 ID4P47928 161 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 DYNLT3P51808 116 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 PLAC9Q5JTB6 97 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 ACER2Q5QJU3 275 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF683Q8IZ20 524 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 LYG1Q8N1E2 194 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 MUC15Q8N387 334 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SYT8Q8NBV8 401 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 OR11G2Q8NGC1 345 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SNRNP40Q96DI7 357 aaKnown RBP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 HSF4Q9ULV5 492 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 PSG11Q9UQ72 335 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 C5orf52A6NGY3 159 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 NPIPB6E9PJ23 425 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 MELTFP08582 738 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 COL8A1P27658 744 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 PSMB2P49721 201 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 UCNP55089 124 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 LILRA6Q6PI73 481 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 REC114Q7Z4M0 266 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF547Q8IVP9 402 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SFTPA2Q8IWL1 248 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SFTPA1Q8IWL2 248 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 D2HGDHQ8N465 521 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 DPF1Q92782 380 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TP53RKQ96S44 253 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 ABCA3Q99758 1704 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 NPVFQ9HCQ7 196 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TCFL5Q9UL49 500 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 IGHV1OR21-1A0A087WYE8 117 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TRAV20A0A0B4J274 112 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 LINC01549A6NIU2 74 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TNFSF15O95150 251 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 ISG15P05161 165 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 UCP3P55916 312 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 CST9Q5W186 159 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 FAAP20Q6NZ36 180 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 GFRALQ6UXV0 394 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 BTLAQ7Z6A9 289 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 RASL11BQ9BPW5 248 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SARGQ9BW04 601 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 MRPL32Q9BYC8 188 aaKnown RBP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 GPR27Q9NS67 375 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 IGHV3-20A0A0C4DH32 117 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 CISD3P0C7P0 127 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 FAM157BP0CG42 384 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 DAOP14920 347 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 NPY1RP25929 384 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 UQCRFS1P47985 274 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 NXPH1P58417 271 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 JOSD1Q15040 202 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-203ENST00000409050 SCGB1D4Q6XE38 83 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 ETFBKMTQ8IXQ9 262 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 C11orf42Q8N5U0 333 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 VSTM2LQ96N03 204 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 PKIBQ9C010 78 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 PLSCR3Q9NRY6 295 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 IFITM10A6NMD0 228 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 MPTX1A8MV57 137 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 H3BQ15 152 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 HLA-DQB1P01920 261 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 CD3EP07766 207 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 PPP2CBP62714 309 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 PPP2CAP67775 309 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 TCTN1Q2MV58 587 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 OR2B11Q5JQS5 317 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 RBPMS2Q6ZRY4 209 aaKnown RBP5.37□□□□□ -1.55
SCN1A-203ENST00000409050 OR2Z1Q8NG97 314 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 OR2Y1Q8NGV0 311 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 RNF122Q9H9V4 155 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 P4HTMQ9NXG6 502 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 UQCR10Q9UDW1 63 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 VENTXO95231 258 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 CA7P43166 264 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF793Q6ZN11 406 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 SPNS2Q8IVW8 549 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 OR8B12Q8NGG6 310 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 OR10D3Q8NH80 312 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms