RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 CDC42EP2O14613 210 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 LANCL1O43813 399 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 NEURL1O76050 574 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 KIAA0040Q15053 153 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 FAM162BQ5T6X4 162 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 LILRB1Q8NHL6 650 aaPredicted RBP12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 ZNF665Q9H7R5 613 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 A0A1W2PNV4 684 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 S100A8P05109 93 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 ASCL5Q7RTU5 278 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 MSRB3Q8IXL7 192 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 SIRT3Q9NTG7 399 aaPredicted RBP12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 CCL8P80075 99 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 SSX8Q7RTT4 187 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 C17orf47Q8NEP4 570 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 LURAP1Q96LR2 239 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 ZNF385DQ9H6B1 395 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 TMED3Q9Y3Q3 217 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 INSIG2Q9Y5U4 225 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 SPAG17Q6Q759 2223 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 SFT2D2O95562 160 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 GUCA2BQ16661 112 aa12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 GMPPAQ96IJ6 420 aaPredicted RBP12.5□□□□□ -0.41
PCDHA11-201ENST00000398640 C19orf57Q0VDD7 668 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 TSPO2Q5TGU0 170 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 MDP1Q86V88 176 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 OR6X1Q8NH79 312 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 PCMT1P22061 227 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 REG1BP48304 166 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 RAB32Q13637 225 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 VAMP3Q15836 100 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 GGNBP1Q5YKI7 109 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 PLPP2O43688 288 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 CTF1Q16619 201 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 RNFT1Q5M7Z0 435 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 RBPMS2Q6ZRY4 209 aaKnown RBP12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 OR4D10Q8NGI6 311 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 ADAMTS17Q8TE56 1095 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 TMEM18Q96B42 140 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 CCL19Q99731 98 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 WDR13Q9H1Z4 485 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 NAA60Q9H7X0 242 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 NAT8BQ9UHF3 227 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 FAM87AP0C7U9 286 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 ZNF721Q8TF20 911 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 GPR27Q9NS67 375 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 IGHV3-21A0A0B4J1V1 117 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 C9orf170A2RU37 121 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 RNASEK-C17orf49H0YIS7 233 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 PNPP00491 289 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 CRYBB2P43320 205 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 GALR1P47211 349 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 SPICQ8N5J4 248 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 NUP37Q8NFH4 326 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 SLC45A2Q9UMX9 530 aa12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 EXOGQ9Y2C4 368 aaKnown RBP12.49□□□□□ -0.41
PCDHA11-201ENST00000398640 GEMIN2O14893 280 aaKnown RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 GNG7O60262 68 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 RAB5AP20339 215 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 TFPI2P48307 235 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 C9orf40Q8IXQ3 194 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 ZDHHC22Q8N966 263 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 ZNF680Q8NEM1 530 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 GPR35Q9HC97 309 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 HILPDAQ9Y5L2 63 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 TRAV39A0A0B4J263 110 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 C19orf67A6NJJ6 358 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 OR5B21A6NL26 309 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 KIAA1324LA8MWY0 1029 aaPredicted RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 ZNF737O75373 536 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 PGA3P0DJD8 388 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 AANATQ16613 207 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 MRM1Q6IN84 353 aaKnown RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 C1RLQ9NZP8 487 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 HTR1DP28221 377 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 GUK1Q16774 197 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 MESTQ5EB52 335 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 TBC1D26Q86UD7 250 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 FAM219AQ8IW50 185 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 MUC20Q8N307 709 aaPredicted RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 RAB40CQ96S21 281 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 PIMREGQ9BSJ6 248 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 CNTRLQ7Z7A1 2325 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 LIPT2A6NK58 231 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 LSM11P83369 360 aaKnown RBP eCLIP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 TMEM37Q8WXS4 190 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 R3HDM4Q96D70 268 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 SCARF2Q96GP6 870 aaPredicted RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 BMPR1BO00238 502 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 NHLH1Q02575 133 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 NHLH2Q02577 135 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 OR2M3Q8NG83 312 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 EAF1Q96JC9 268 aaPredicted RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 RNF2Q99496 336 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 SF3B5Q9BWJ5 86 aaKnown RBP12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 MPC1Q9Y5U8 109 aa12.48□□□□□ -0.41
PCDHA11-201ENST00000398640 A0A1W2PPE3 182 aa12.47□□□□□ -0.41
PCDHA11-201ENST00000398640 MAP1LC3B2A6NCE7 125 aa12.47□□□□□ -0.41
PCDHA11-201ENST00000398640 NDUFB6O95139 128 aa12.47□□□□□ -0.41
PCDHA11-201ENST00000398640 CAMPP49913 170 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms