RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RNF223E7ERA6 249 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 NDUFB3O43676 98 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 HIST1H1DP16402 221 aaKnown RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 EFNB2P52799 333 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 LOXL3P58215 753 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 CCDC190Q86UF4 302 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 GLCCI1Q86VQ1 547 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 CCL13Q99616 98 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 MEGF9Q9H1U4 602 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 MMP27Q9H306 513 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 SCPEP1Q9HB40 452 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 LOC105371242A0A075B767 164 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 A0A1W2PP11 408 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 PITPNAQ00169 270 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 EIF4EBP1Q13541 118 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 MIDNQ504T8 468 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 HACD4Q5VWC8 232 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 FAM216BQ8N7L0 139 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 OR51D1Q8NGF3 324 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 C15orf40Q8WUR7 153 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 SEH1LQ96EE3 360 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 SPACA5Q96QH8 159 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 Q9N2K0 584 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 OR6C3Q9NZP0 311 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 N6AMT1Q9Y5N5 214 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 PNMA8CA0A1B0GUJ8 204 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 DPPA5A6NC42 116 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 CLDN34H7C241 214 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 DEGS1O15121 323 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 SSX5O60225 188 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 IGLV1-47P01700 117 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 HLA-DQB1P01920 261 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 RPS2P15880 293 aaKnown RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 MRPS10P82664 201 aaKnown RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 HOXA4Q00056 320 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 ESCO2Q56NI9 601 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 AVPI1Q5T686 147 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 OR5H6Q8NGV6 325 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 LGALS14Q8TCE9 139 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 FAM46BQ96A09 425 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 ZMAT3Q9HA38 289 aaKnown RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF581Q9P0T4 197 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 SLC23A1Q9UHI7 598 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 ING4Q9UNL4 249 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 IGHV3OR15-7A0A075B7D8 119 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 A0A0A6YYJ9 748 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 KBTBD11-OT1A0A1B0GTJ5 212 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 A0A1W2PPK0 400 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 ADAM20O43506 726 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 HOXB4P17483 251 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 GZMHP20718 246 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 KLF17Q5JT82 389 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 NCR3LG1Q68D85 454 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 BTN2A1Q7KYR7 527 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 JAGN1Q8N5M9 183 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 TMEM86BQ8N661 226 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 SULT4A1Q9BR01 284 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 NICN1Q9BSH3 213 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 GHITMQ9H3K2 345 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 CLN8Q9UBY8 286 aa5.75□□□□□ -1.49
LIMA1-202ENST00000394943 TBL2Q9Y4P3 447 aaKnown RBP5.75□□□□□ -1.49
LIMA1-202ENST00000394943 ITPR2Q14571 2701 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 A0A1W2PPH5 198 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 TMEM30CPA0ZSE6 113 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 ODAMA1E959 279 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 A6NLC8 198 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 LY6G6DO95868 133 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 GLP1RP43220 463 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 CBX5P45973 191 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 HNRNPA0Q13151 305 aaKnown RBP5.74□□□□□ -1.49
LIMA1-202ENST00000394943 CLVS1Q8IUQ0 354 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-202ENST00000394943 CMTM4Q8IZR5 234 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 GPX8Q8TED1 209 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 RFT1Q96AA3 541 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 AUNIPQ9H7T9 357 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 RAB9BQ9NP90 201 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 C19orf12Q9NSK7 152 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 RHBDL2Q9NX52 303 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 SESN1Q9Y6P5 492 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 hADV38S2A0JD32 116 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 FAM90A9PA6NNJ1 464 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 OOSP1A8MZH6 123 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 SOCS1O15524 211 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 YPEL1O60688 119 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 CLPXO76031 633 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 UBE2E1P51965 193 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 GNB2P62879 340 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 MOGAT2Q3SYC2 334 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 STEAP3Q658P3 488 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 MZT2AQ6P582 158 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 HOGA1Q86XE5 327 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 ST6GALNAC6Q969X2 333 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 YPEL2Q96QA6 119 aa5.74□□□□□ -1.49
LIMA1-202ENST00000394943 TUSC2O75896 110 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 HTR3BO95264 441 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 CD74P04233 296 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 FGF2P09038 288 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 SERPINB10P48595 397 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 EBI3Q14213 229 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 C6orf183Q5T699 404 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms