RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MIEN1Q9BRT3 115 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 R3HDMLQ9H3Y0 253 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 EDIL3O43854 480 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 APCSP02743 223 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 PRR35P0CG20 571 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 OR8I2Q8N0Y5 310 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 M0R296 226 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 IGHV3-13P01766 116 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 IGHV3-7P01780 117 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 HIST1H1BP16401 226 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 RPL29P47914 159 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 SSX1Q16384 188 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 RAB24Q969Q5 203 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 MOGAT1Q96PD6 335 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 SLC25A33Q9BSK2 321 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 TMEM38BQ9NVV0 291 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 PRSS50Q9UI38 385 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 AKAP11Q9UKA4 1901 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 IGLV3-16A0A075B6K0 115 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 A0A1W2PQD3 144 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 C21orf140B9A014 251 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 J3KRW8 73 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 AP4M1O00189 453 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 PCMT1P22061 227 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 CCDC144NLQ6NUI1 221 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 WDR74Q6RFH5 385 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 MOGAT3Q86VF5 341 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 ZBTB34Q8NCN2 500 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 OR4X1Q8NH49 305 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 IGHV1OR15-9A0A0B4J2B8 117 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 SBK3P0C264 359 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 PPP1CCP36873 323 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF764Q96H86 408 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 SLIRPQ9GZT3 109 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 A0A1W2PRD5 423 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 A0A1W2PRF3 423 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 A0A1W2PRM7 423 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 CTSVO60911 334 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 RNF224P0DH78 156 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 INPP5JQ15735 1006 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 DTD1Q8TEA8 209 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 WDR34Q96EX3 536 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 ALS2Q96Q42 1657 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 POLR2GP62487 172 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 FAM109BQ6ICB4 259 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF784Q8NCA9 323 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 OR5A2Q8NGI9 324 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 TMEFF2Q9UIK5 374 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF253O75346 499 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 SLC23A3Q6PIS1 610 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 SLC35E3Q7Z769 313 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 GBGT1Q8N5D6 347 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF552Q9H707 407 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 MEX3AA1L020 520 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 RPL24P83731 157 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 C11orf91Q3C1V1 193 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 C16orf82Q7Z2V1 217 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 PRO1933Q9H354 126 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 DPPA3Q6W0C5 159 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 PLA2G2FQ9BZM2 168 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 AUP1Q9Y679 476 aa11.28□□□□□ -0.6
CCDC88C-204ENST00000389857 RELBQ01201 579 aa11.27□□□□□ -0.6
CCDC88C-204ENST00000389857 CLPPQ16740 277 aaPredicted RBP11.27□□□□□ -0.6
CCDC88C-204ENST00000389857 LPAR5Q9H1C0 372 aa11.27□□□□□ -0.6
CCDC88C-204ENST00000389857 RABAC1Q9UI14 185 aa11.27□□□□□ -0.6
CCDC88C-204ENST00000389857 LIPGQ9Y5X9 500 aa11.27□□□□□ -0.6
CCDC88C-204ENST00000389857 COTL1Q14019 142 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 FOXB2Q5VYV0 432 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 RHBDD2Q6NTF9 364 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 PWWP2BQ6NUJ5 590 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 OR5AU1Q8NGC0 362 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 HARBI1Q96MB7 349 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 CHST1O43916 411 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 CTLA4P16410 223 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 NXPH1P58417 271 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 BPIFA4PQ86YQ2 179 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 SYT8Q8NBV8 401 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF107Q9UII5 783 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 ARG1P05089 322 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM251Q8N6I4 163 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF441Q8N8Z8 693 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 OR1N2Q8NGR9 330 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 TREM2Q9NZC2 230 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 C9orf50Q5SZB4 431 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 AMMECR1LQ6DCA0 310 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 GVQW1Q8N7I0 195 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 OR8A1Q8NGG7 326 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 SIRT7Q9NRC8 400 aa11.27□□□□□ -0.61
CCDC88C-204ENST00000389857 SPANXN1Q5VSR9 72 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM30AQ9NV96 361 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 MED19A0JLT2 244 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 FXYD1O00168 92 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 MPZL1O95297 269 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 MPV17LQ2QL34 196 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 OR1L8Q8NGR8 309 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 MS4A5Q9H3V2 200 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 SLC52A3Q9NQ40 469 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 A0A1B0GU03 582 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 CDRT15L2A8MXV6 281 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 WNT3P56703 355 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms