RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 TMEM50AO95807 157 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 PATE4P0C8F1 98 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 MMP9P14780 707 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 THNSL2Q86YJ6 484 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 ZNF501Q96CX3 271 aaPredicted RBP11.85□□□□□ -0.51
USP49-201ENST00000373006 UCN2Q96RP3 112 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 CHRNA10Q9GZZ6 450 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 DMDP11532 3685 aa11.85□□□□□ -0.51
USP49-201ENST00000373006 AQP7P3A6NL99 342 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 MPPED1O15442 326 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 NPSP0C0P6 89 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 VAMP2P63027 116 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 TNFRSF9Q07011 255 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 HIST2H3PS2Q5TEC6 136 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ZNF880Q6PDB4 577 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ZNF695Q8IW36 515 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 NAT6Q93015 286 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ANGPTL4Q9BY76 406 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 SMDT1Q9H4I9 107 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 FOXD3Q9UJU5 478 aaPredicted RBP11.84□□□□□ -0.51
USP49-201ENST00000373006 HSPA12AO43301 675 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ADAM20O43506 726 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 DTYMKP23919 212 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 GLIPR1P48060 266 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ZNF154Q13106 437 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 NCR3LG1Q68D85 454 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 PLXDC1Q8IUK5 500 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ZNF664Q8N3J9 261 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 MOB3AQ96BX8 217 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 BORCS8Q96FH0 119 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 NEU1Q99519 415 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 DDA1Q9BW61 102 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ZNF442Q9H7R0 627 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 PLEKHF2Q9H8W4 249 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 ZNF286AQ9HBT8 521 aa11.84□□□□□ -0.51
USP49-201ENST00000373006 H3BP45 60 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 NUTF2P61970 127 aaKnown RBP11.83□□□□□ -0.51
USP49-201ENST00000373006 RAB11AP62491 216 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 ZNF705AQ6ZN79 300 aaPredicted RBP11.83□□□□□ -0.51
USP49-201ENST00000373006 C17orf82Q86X59 251 aaPredicted RBP11.83□□□□□ -0.51
USP49-201ENST00000373006 CMTM1Q8IZ96 169 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 OR2M3Q8NG83 312 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 NABP1Q96AH0 204 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 PPP1R14DQ9NXH3 145 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 GNG13Q9P2W3 67 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 WNT16Q9UBV4 365 aa11.83□□□□□ -0.51
USP49-201ENST00000373006 A0A087WWC5 75 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 LMO7DNF2Z398 122 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 ETV2O00321 342 aaPredicted RBP11.83□□□□□ -0.52
USP49-201ENST00000373006 TIAF1O95411 115 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 PPYP01298 95 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 ODF3L1Q8IXM7 274 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 FAM210BQ96KR6 192 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 CALHM2Q9HA72 323 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 MYOTQ9UBF9 498 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 COL6A3P12111 3177 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 ZFP92A6NM28 416 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 LCATP04180 440 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 MSX1P28360 303 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 GNRHRP30968 328 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 LTBRP36941 435 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 SHBQ15464 509 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 MPV17LQ2QL34 196 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 SLC25A53Q5H9E4 307 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 TBC1D26Q86UD7 250 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 OSR2Q8N2R0 312 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 CLDND2Q8NHS1 167 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 OPN3Q9H1Y3 402 aaPredicted RBP11.83□□□□□ -0.52
USP49-201ENST00000373006 RIMS4Q9H426 269 aaPredicted RBP11.83□□□□□ -0.52
USP49-201ENST00000373006 SLC7A10Q9NS82 523 aa11.83□□□□□ -0.52
USP49-201ENST00000373006 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 TRDCB7Z8K6 153 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 G3V3Y1 287 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 PITX3O75364 302 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 OR7C1O76099 320 aaPredicted RBP11.82□□□□□ -0.52
USP49-201ENST00000373006 HLA-DRB3P79483 266 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 MAJINQ3KP22 176 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 DMRTA1Q5VZB9 504 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 ZNF100Q8IYN0 542 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 CCDC71LQ8N9Z2 235 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 ADPRHL1Q8NDY3 354 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 SPTSSAQ969W0 71 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 TMEM222Q9H0R3 208 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 C11orf1Q9H5F2 150 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 LYRM2Q9NU23 88 aaPredicted RBP11.82□□□□□ -0.52
USP49-201ENST00000373006 IGHV1OR15-9A0A0B4J2B8 117 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 DHHO43323 396 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 CHST1O43916 411 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 ZNF774Q6NX45 483 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 GAB2Q9UQC2 676 aa11.82□□□□□ -0.52
USP49-201ENST00000373006 DUX1O43812 170 aa11.81□□□□□ -0.52
USP49-201ENST00000373006 HLA-HP01893 362 aa11.81□□□□□ -0.52
USP49-201ENST00000373006 HSPB1P04792 205 aaKnown RBP11.81□□□□□ -0.52
USP49-201ENST00000373006 FUT3P21217 361 aa11.81□□□□□ -0.52
USP49-201ENST00000373006 CD200P41217 278 aa11.81□□□□□ -0.52
USP49-201ENST00000373006 ZNF506Q5JVG8 444 aa11.81□□□□□ -0.52
USP49-201ENST00000373006 WDR25Q64LD2 544 aaPredicted RBP11.81□□□□□ -0.52
USP49-201ENST00000373006 SNIP1Q8TAD8 396 aaKnown RBP11.81□□□□□ -0.52
USP49-201ENST00000373006 WNT5BQ9H1J7 359 aa11.81□□□□□ -0.52
USP49-201ENST00000373006 COL5A1P20908 1838 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms