RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HAND1O96004 215 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 SCTP09683 121 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 EGR1P18146 543 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 SUPT4H1P63272 117 aaKnown RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 DHODHQ02127 395 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 HERPUD1Q15011 391 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 ADIPOQQ15848 244 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 PAN3Q58A45 887 aaKnown RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 ADAM5Q6NVV9 412 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF880Q6PDB4 577 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 SSX8Q7RTT4 187 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 LRRC29Q8WV35 223 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 MEGF10Q96KG7 1140 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 TMEM165Q9HC07 324 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 OR14J1Q9UGF5 321 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 SLC23A1Q9UHI7 598 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 IGKV1-6A0A0C4DH72 117 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 hCG_1807616A0A1W2PRN6 198 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 GOSR2O14653 212 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 RPS2P15880 293 aaKnown RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 RCC1P18754 421 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 RBM39Q14498 530 aaKnown RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 SURF2Q15527 256 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 LY6G6FQ5SQ64 297 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 LAMTOR1Q6IAA8 161 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 DMRTC2Q8IXT2 367 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 LILRB4Q8NHJ6 448 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 MITD1Q8WV92 249 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 ITLN1Q8WWA0 313 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 FXYD6Q9H0Q3 95 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 SH2D1BO14796 132 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 IGHV1-46P01743 117 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 NFYAP23511 347 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-202ENST00000372405 VAMP1P23763 118 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 LMO1P25800 156 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 ERP29P30040 261 aaKnown RBP11.6□□□□□ -0.55
PTPRF-202ENST00000372405 FCGR2CP31995 323 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF81P51508 661 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 IL13RA1P78552 427 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 MZT1Q08AG7 82 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 TMEM128Q5BJH2 165 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 SHEQ5VZ18 495 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 LIN54Q6MZP7 749 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF497Q6ZNH5 498 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 GAPTQ8N292 157 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 OR2T35Q8NGX2 323 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 RNASE6Q93091 150 aaKnown RBP11.6□□□□□ -0.55
PTPRF-202ENST00000372405 RIMS4Q9H426 269 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-202ENST00000372405 METRNQ9UJH8 293 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 ATP23Q9Y6H3 246 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 ANKHD1Q8IWZ3 2542 aaKnown RBP11.6□□□□□ -0.55
PTPRF-202ENST00000372405 KIAA2026Q5HYC2 2103 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 IGSF10Q6WRI0 2623 aa11.6□□□□□ -0.55
PTPRF-202ENST00000372405 TRAV39A0A0B4J263 110 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 SRRM5B3KS81 715 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 SHISA9B4DS77 424 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 TRDCB7Z8K6 153 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 SLC22A5O76082 557 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 GIPP09681 153 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-202ENST00000372405 OR4A8P0C604 315 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 CFHR2P36980 270 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 TAS2R31P59538 309 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 ATXN7L3Q14CW9 347 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-202ENST00000372405 NCMAPQ5T1S8 102 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 MOGAT3Q86VF5 341 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 GCSAMQ8N6F7 178 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 LINC01560Q8TB33 94 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 TREM2Q9NZC2 230 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 PAIP2BQ9ULR5 123 aaKnown RBP11.59□□□□□ -0.55
PTPRF-202ENST00000372405 PKDREJQ9NTG1 2253 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 CFAP46Q8IYW2 2715 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 FAM172BPA6NC97 362 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 RFPL4AA6NLU0 287 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 RFPL4AL1F8VTS6 287 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 ATP6V1G1O75348 118 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 DUS4LO95620 317 aaKnown RBP11.59□□□□□ -0.55
PTPRF-202ENST00000372405 AADACP22760 399 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 CD34P28906 385 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 GATA4P43694 442 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 SELENOVP59797 346 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 IFITM2Q01629 132 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 CLEC18BQ6UXF7 455 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 CASTOR1Q8WTX7 329 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 NEUROG1Q92886 237 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 SCGB3A2Q96PL1 93 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 PRR13Q9NZ81 148 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 COQ3Q9NZJ6 369 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 OPN4Q9UHM6 478 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 USP24Q9UPU5 2620 aa11.59□□□□□ -0.55
PTPRF-202ENST00000372405 DSCAMO60469 2012 aa11.58□□□□□ -0.55
PTPRF-202ENST00000372405 HCFC1P51610 2035 aa11.58□□□□□ -0.55
PTPRF-202ENST00000372405 DBX1A6NMT0 343 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 KNG1P01042 644 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 LHBP01229 141 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 PGAM2P15259 253 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 MDH2P40926 338 aaKnown RBP11.58□□□□□ -0.56
PTPRF-202ENST00000372405 FXYD4P59646 89 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 SMIM21Q3B7S5 101 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 FIP1L1Q6UN15 594 aaKnown RBP11.58□□□□□ -0.56
PTPRF-202ENST00000372405 OR5T2Q8NGG2 359 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms