RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 VAMP5O95183 116 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 IGHEP01854 428 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 HLA-DQA2P01906 255 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ADH4P08319 380 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FCGR3AP08637 254 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 HOXD4P09016 255 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 TACSTD2P09758 323 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RRASP10301 218 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TCN2P20062 427 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CEACAM8P31997 349 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 HRH1P35367 487 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 EIF2B2P49770 351 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 RIDAP52758 137 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 ERVS71-1P61550 626 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 GRB2P62993 217 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 PMP22Q01453 160 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ECH1Q13011 328 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 NMSQ5H8A3 153 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 DCAF12Q5T6F0 453 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 OPN5Q6U736 354 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RFPL4BQ6ZWI9 263 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ASCL5Q7RTU5 278 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 HAPLN4Q86UW8 402 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMEM200AQ86VY9 491 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMPRSS12Q86WS5 348 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TGIF2LYQ8IUE0 185 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 UEVLDQ8IX04 471 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SAXO1Q8IYX7 474 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 C11orf42Q8N5U0 333 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF433Q8N7K0 673 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF611Q8N823 705 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZDHHC22Q8N966 263 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 C9orf106Q8NAJ2 232 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 OR6K3Q8NGY3 331 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PIGTQ969N2 578 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 MRPS24Q96EL2 167 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 RADILQ96JH8 1075 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CEP19Q96LK0 163 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TSNAXQ99598 290 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 FAM173AQ9BQD7 235 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SLC5A7Q9GZV3 580 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PARP12Q9H0J9 701 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMEM138Q9NPI0 162 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TAAR3PQ9P1P4 343 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 COPZ2Q9P299 210 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 MYEF2Q9P2K5 600 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF222Q9UK12 451 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RAB22AQ9UL26 194 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 HHLA2Q9UM44 414 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 EPG5Q9HCE0 2579 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FAM208BQ5VWN6 2430 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PLECQ15149 4684 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 CENPEQ02224 2701 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PKDREJQ9NTG1 2253 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 NSG1A0A0A6YYJ2 146 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 A0A0B4J2A0 478 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 hCG_1807616A0A1W2PRN6 198 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FAM90A8PA6NJQ4 464 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 H0YL77 283 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CXCL13O43927 109 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A12O75746 678 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RHBDL1O75783 438 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RGS11O94810 467 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 AHSA1O95433 338 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 KRT8P05787 483 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 HNRNPCP07910 306 aaKnown RBP eCLIP1.92□□□□□ -2.13e-6■■□□□ 13.2
VPS54-202ENST00000354504 FAM90A13PP0C7W8 464 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FAM90A24PP0C7X0 464 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 B4GALT1P15291 398 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF250P15622 560 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 MAPK3P27361 379 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 GNRHRP30968 328 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 S100A5P33763 92 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SFTPDP35247 375 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RFC3P40938 356 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FOLR3P41439 243 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CSNK1A1P48729 337 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RBM11P57052 281 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 PLP2Q04941 152 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PDZK1IP1Q13113 114 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF146Q15072 292 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RBMS2Q15434 407 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 OR1C1Q15619 314 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RAB11BQ15907 218 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF585BQ52M93 769 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CLLU1Q5K131 121 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PVRIGQ6DKI7 326 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 STEAP1BQ6NZ63 245 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF474Q6S9Z5 364 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 KLHL24Q6TFL4 600 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 DHRS13Q6UX07 377 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 Q6ZS92 163 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FAM57BQ71RH2 274 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 OR13C3Q8NGS6 347 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 OR1F12Q8NHA8 337 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 GLYATL2Q8WU03 294 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 GALNT14Q96FL9 552 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ALKBH3Q96Q83 286 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMEM246Q9BRR3 403 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 C1QTNF6Q9BXI9 259 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms