RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 OR2W5A6NFC9 320 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 CTSVO60911 334 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 CA2P00918 260 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 PTGER1P34995 402 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 CIRBPQ14011 172 aaKnown RBP11.84□□□□□ -0.51
COL6A3-202ENST00000347401 HFEQ30201 348 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 SOX21Q9Y651 276 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-202ENST00000347401 HOXB1P14653 301 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-202ENST00000347401 CD82P27701 267 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 ZNF141Q15928 474 aa11.84□□□□□ -0.51
COL6A3-202ENST00000347401 F11P03951 625 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 ATP5IP56385 69 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-202ENST00000347401 EMC6Q9BV81 110 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 PKIBQ9C010 78 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 SLC25A22Q9H936 323 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 ZDHHC8Q9ULC8 765 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 ASTLQ6HA08 431 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-202ENST00000347401 VAX1Q5SQQ9 334 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 OR1N2Q8NGR9 330 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 IFITM10A6NMD0 228 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 DHHO43323 396 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 TWSG1Q9GZX9 223 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 NKX2-2O95096 273 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 FAM78AQ5JUQ0 283 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 FAM209BQ5JX69 171 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 ELSPBP1Q96BH3 223 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 MPTX1A8MV57 137 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 OR5R1Q8NH85 324 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 FUT9Q9Y231 359 aa11.83□□□□□ -0.52
COL6A3-202ENST00000347401 F5H697 171 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 OR1N1Q8NGS0 311 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 USF3Q68DE3 2245 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 TCF21O43680 179 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 TMPRSS11DO60235 418 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 GHRHP01286 108 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 KLF9Q13886 244 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-202ENST00000347401 FAM27D1Q5T7N8 215 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 C9orf135Q5VTT2 229 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 FBXL14Q8N1E6 418 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 VN1R17PQ8TDU5 208 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 SFRP2Q96HF1 295 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 OR2W1Q9Y3N9 320 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 WIPI2Q9Y4P8 454 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 NUDT3O95989 172 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 PPP1R17O96001 155 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 GALNSP34059 522 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 MEF2BQ02080 365 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-202ENST00000347401 WDR38Q5JTN6 314 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 FAM209AQ5JX71 171 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 LDLRAD1Q5T700 205 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 CST9Q5W186 159 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 CA13Q8N1Q1 262 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 OR6X1Q8NH79 312 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 PARD6GQ9BYG4 376 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-202ENST00000347401 IGLV3-16A0A075B6K0 115 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 FOLR2P14207 255 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 ACAA2P42765 397 aaKnown RBP11.82□□□□□ -0.52
COL6A3-202ENST00000347401 TEPPQ6URK8 271 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 C6orf15Q6UXA7 325 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-202ENST00000347401 OR8G5Q8NG78 346 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 HHIPQ96QV1 700 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 FGF17O60258 216 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 LBX1P52954 281 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 RPS20P60866 119 aaKnown RBP11.82□□□□□ -0.52
COL6A3-202ENST00000347401 SELENOTP62341 195 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 H3BP45 60 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 NUP37Q8NFH4 326 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 PRDM7Q9NQW5 492 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 C1RLQ9NZP8 487 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 LYZL6O75951 148 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 FCARP24071 287 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 TCL1AP56279 114 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 GLCCI1Q86VQ1 547 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 LRP5O75197 1615 aa11.82□□□□□ -0.52
COL6A3-202ENST00000347401 CFDP00746 253 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 CRYABP02511 175 aaKnown RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 HOXC4P09017 264 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 DMKNQ6E0U4 476 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 NUBPLQ8TB37 319 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 TSPAN13O95857 204 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 EPHA8P29322 1005 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 OR2V1Q8NHB1 315 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 KISS1RQ969F8 398 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 SNRNP40Q96DI7 357 aaKnown RBP11.81□□□□□ -0.52
COL6A3-202ENST00000347401 GABRG3Q99928 467 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 VN1R1Q9GZP7 353 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 HCFC1R1Q9NWW0 138 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 OR51B4Q9Y5P0 310 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 IL11RAQ14626 422 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 MRGPREQ86SM8 312 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 CAMPP49913 170 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 MYBPHQ13203 477 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 C10orf126Q8N4M7 172 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 MEGF10Q96KG7 1140 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 TBX15Q96SF7 602 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 ELOVL1Q9BW60 279 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 ALG1L2C9J202 215 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 EMP1P54849 157 aa11.81□□□□□ -0.52
COL6A3-202ENST00000347401 PRDX4Q13162 271 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms