RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 LBX1P52954 281 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ASCL5Q7RTU5 278 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 TRBV9A0A0B4J1U6 114 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 PRRG2O14669 202 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 TBC1D26Q86UD7 250 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 LOXL2Q9Y4K0 774 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 PLXNA2O75051 1894 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ACTL6AO96019 429 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ERVS71-1P61550 626 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 PAX5Q02548 391 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 OR2T6Q8NHC8 308 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 GSX1Q9H4S2 264 aaPredicted RBP9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 A6NDN8 102 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 OR5G3P0C626 314 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 OR4D11Q8NGI4 311 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 ZFP64Q9NPA5 681 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM38BQ9NVV0 291 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 PRNDQ9UKY0 176 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 DYNLT3P51808 116 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 MYPOPQ86VE0 399 aaPredicted RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 PATE1Q8WXA2 126 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 A0A1W2PNV4 684 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 DXOO77932 396 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 PNPP00491 289 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 IGFBP6P24592 240 aaPredicted RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 C6orf201Q7Z4U5 140 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 SAXO1Q8IYX7 474 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 OR5A2Q8NGI9 324 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 TM4SF19Q96DZ7 209 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 RAB33BQ9H082 229 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 METTL1Q9UBP6 276 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 SPRY1O43609 319 aaPredicted RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 STUMQ69YW2 141 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 D2HGDHQ8N465 521 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 OR4F17Q8NGA8 305 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 PLXNB3Q9ULL4 1909 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 IGHV1OR21-1A0A087WYE8 117 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 CXCL13O43927 109 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 FMODQ06828 376 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 UNQ9370/PRO34162Q6UXP9 181 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 EIF4E3Q8N5X7 224 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 OR10G8Q8NGN5 311 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 FAAP24Q9BTP7 215 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 LRRK1Q38SD2 2015 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 PLXNA4Q9HCM2 1894 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 IGHV3-20A0A0C4DH32 117 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 NGFP01138 241 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 CD74P04233 296 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 CD99P14209 185 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 DOCK7Q96N67 2140 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 INTS1Q8N201 2190 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 KIF26AQ9ULI4 1882 aaPredicted RBP9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 ZDBF2Q9HCK1 2354 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 IGSF23A1L1A6 192 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 NXPH3O95157 252 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 FCARP24071 287 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 DIRC2Q96SL1 478 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 C1QTNF6Q9BXI9 259 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 VSIG4Q9Y279 399 aa9.07□□□□□ -0.96
CCDC88A-202ENST00000336838 TRBV5-7A0A0A0MS05 114 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 H3BQ15 152 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM109BQ6ICB4 259 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF775Q96BV0 537 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 ERRFI1Q9UJM3 462 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 hADV38S2A0JD32 116 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 MPGP29372 298 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF230Q9UIE0 474 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 TRAV17A0A0B4J275 112 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 A0A1W2PPC1 479 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 CYB5R3P00387 301 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 HPXP02790 462 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 MPLP40238 635 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 LTC4SQ16873 150 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 LINC00696Q6ZRV3 163 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 G3V3Y1 287 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 EFSO43281 561 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 RPS16P62249 146 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 CYB5R2Q6BCY4 276 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 LRP11Q86VZ4 500 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 NRIP2Q9BQI9 281 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM234AQ9H0X4 552 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 WDR13Q9H1Z4 485 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 CXXC4Q9H2H0 198 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 COTL1Q14019 142 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 Q3ZCU0 254 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 OR1L3Q8NH93 324 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 TPPP3Q9BW30 176 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 CHD3Q12873 2000 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 WNK2Q9Y3S1 2297 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 CDAP32320 146 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 H1FXQ92522 213 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 C21orf140B9A014 251 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 SMIM17P0DL12 118 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 GZMHP20718 246 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 RPL13AP40429 203 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 RPS27P42677 84 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM267Q0VDI3 215 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 C19orf24Q9BVV8 132 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM191AQ9H0A3 160 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 CDC42EP3Q9UKI2 254 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms