RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 MRPL24Q96A35 216 aaKnown RBP12.15□□□□□ -0.46
VRK3-201ENST00000316763 MOB3AQ96BX8 217 aa12.15□□□□□ -0.46
VRK3-201ENST00000316763 SAT2Q96F10 170 aaPredicted RBP12.15□□□□□ -0.46
VRK3-201ENST00000316763 LIME1Q9H400 295 aa12.15□□□□□ -0.46
VRK3-201ENST00000316763 PLEKHA2Q9HB19 425 aa12.15□□□□□ -0.46
VRK3-201ENST00000316763 COL6A6A6NMZ7 2263 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 FAM221AA4D161 298 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 CST4P01036 141 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 HLA-HP01893 362 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 FOXG1P55316 489 aaPredicted RBP12.14□□□□□ -0.47
VRK3-201ENST00000316763 CEACAM21Q3KPI0 293 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 IL34Q6ZMJ4 242 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 MKXQ8IYA7 352 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 LRTM2Q8N967 370 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 C9orf106Q8NAJ2 232 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 LRRC46Q96FV0 321 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 MARS2Q96GW9 593 aaKnown RBP12.14□□□□□ -0.47
VRK3-201ENST00000316763 HIST1H2AAQ96QV6 131 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 PRSS50Q9UI38 385 aa12.14□□□□□ -0.47
VRK3-201ENST00000316763 MBD3L4A6NDZ8 208 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 MBD3L3A6NE82 208 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 MBD3L5A6NJ08 208 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 ZNF705EA8MWA4 302 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 OR5AC1P0C628 307 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 ATF4P18848 351 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 OR2A2Q6IF42 318 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 LIAT1Q6ZQX7 453 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 DPPA2Q7Z7J5 298 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 LGI3Q8N145 548 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 MBD3L2Q8NHZ7 208 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 C12orf49Q9H741 205 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 TAF9BQ9HBM6 251 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 MMP26Q9NRE1 261 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 SLC2A9Q9NRM0 540 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 LPAR3Q9UBY5 353 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 LSM5Q9Y4Y9 91 aaKnown RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 ZFYVE26Q68DK2 2539 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 E5RGE8 158 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 TRAPPC2LH3BP13 241 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 WDR1O75083 606 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 JTBO76095 146 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 GAPDHP04406 335 aaKnown RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 FAM157CP0CG43 387 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 KIR2DL2P43627 348 aaPredicted RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 NPBWR2P48146 333 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 FGF12P61328 243 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 RAB1AP62820 205 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 ZNF273Q14593 569 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 PDCD1Q15116 288 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 SRSF7Q16629 238 aaKnown RBP eCLIP12.13□□□□□ -0.47
VRK3-201ENST00000316763 PHLDA2Q53GA4 152 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 Q6ZS49 121 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 SEM1Q6ZVN7 128 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 FAM185AQ8N0U4 392 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 GCNT2Q8N0V5 402 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 BOLLQ8N9W6 283 aaKnown RBP12.13□□□□□ -0.47
VRK3-201ENST00000316763 SLAMF9Q96A28 289 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 RSRP1Q9BUV0 290 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 NSG2Q9Y328 171 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 FREM1Q5H8C1 2179 aa12.13□□□□□ -0.47
VRK3-201ENST00000316763 TMEM218A2RU14 115 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 H7C1Q1 480 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 CNOT4O95628 575 aaKnown RBP12.12□□□□□ -0.47
VRK3-201ENST00000316763 DIRAS3O95661 229 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 SCGB1D2O95969 90 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 IL18BPO95998 194 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 PRB1P04280 392 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 BCL3P20749 454 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 DUSP1P28562 367 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 HAAOP46952 286 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 GPM6AP51674 278 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 SP6Q3SY56 376 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 RPL7L1Q6DKI1 246 aaKnown RBP12.12□□□□□ -0.47
VRK3-201ENST00000316763 GFRALQ6UXV0 394 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 OR5T2Q8NGG2 359 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 OR5A2Q8NGI9 324 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 MED12LQ86YW9 2145 aa12.12□□□□□ -0.47
VRK3-201ENST00000316763 CCL2P13500 99 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 AADACP22760 399 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 APLNRP35414 380 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 BLOC1S1P78537 153 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 SRPXP78539 464 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 MPV17LQ2QL34 196 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 OR5L1Q8NGL2 311 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 FAM57AQ8TBR7 257 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 C18orf12Q96KH6 178 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 NKX6-2Q9C056 277 aaPredicted RBP12.11□□□□□ -0.47
VRK3-201ENST00000316763 FAM215AQ9Y5M1 114 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 KALRNO60229 2985 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 ZNF732B4DXR9 585 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 ATG12O94817 140 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 ZNF205O95201 554 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 PPYP01298 95 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 PJVKQ0ZLH3 352 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 FAM219AQ8IW50 185 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 NANOS1Q8WY41 292 aaKnown RBP12.11□□□□□ -0.47
VRK3-201ENST00000316763 SMIM8Q96KF7 97 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 POM121L2Q96KW2 1035 aa12.11□□□□□ -0.47
VRK3-201ENST00000316763 TSNAXQ99598 290 aaKnown RBP12.11□□□□□ -0.47
VRK3-201ENST00000316763 PLK3Q9H4B4 646 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms