RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 PDCD6O75340 191 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 SCTP09683 121 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 PGA3P0DJD8 388 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 ZNF100Q8IYN0 542 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 OR10AD1Q8NGE0 317 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 OR56B2PQ8NGI1 322 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 OR6X1Q8NH79 312 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 CHST5Q9GZS9 411 aa12.58□□□□□ -0.39
PTPRN-201ENST00000295718 DVL1O14640 695 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 CXCL1P09341 107 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 PRF1P14222 555 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 HBG1P69891 147 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 HBG2P69892 147 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 KHDC3LQ587J8 217 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 GCM1Q9NP62 436 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 LOC102725191A0A1B0GVB3 256 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 A0A1W2PPV4 95 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 BCAT2O15382 392 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-201ENST00000295718 TRAF3IP2O43734 574 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-201ENST00000295718 OR1F12Q8NHA8 337 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 GPR87Q9BY21 358 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 AKIRIN1Q9H9L7 192 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-201ENST00000295718 FUT9Q9Y231 359 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 CLDN16Q9Y5I7 305 aa12.58□□□□□ -0.4
PTPRN-201ENST00000295718 IGSF23A1L1A6 192 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 ZNF320A2RRD8 509 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 ZNF732B4DXR9 585 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 NPBWR2P48146 333 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 PSMB3P49720 205 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 IL22RA2Q969J5 263 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 MARS2Q96GW9 593 aaKnown RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 RASL10BQ96S79 203 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 MAP1LC3B2A6NCE7 125 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 TCAPO15273 167 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 DDTP30046 118 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 ZNF816Q0VGE8 651 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 RPS19BP1Q86WX3 136 aaKnown RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 MAP1LC3BQ9GZQ8 125 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 SMOC1Q9H4F8 434 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 PLA2G3Q9NZ20 509 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 MTCH2Q9Y6C9 303 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 EPOPA6NHQ4 379 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 CSRP1P21291 193 aaKnown RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 WIPI1Q5MNZ9 446 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 FAM103A1Q9BTL3 118 aaKnown RBP12.57□□□□□ -0.4
PTPRN-201ENST00000295718 C12orf49Q9H741 205 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 DMRT1Q9Y5R6 373 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 ARHGAP21Q5T5U3 1957 aa12.57□□□□□ -0.4
PTPRN-201ENST00000295718 NPIPB7O75200 414 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 IGHV3-13P01766 116 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 IGHV3-7P01780 117 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 LBX1P52954 281 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CTAG1AP78358 180 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 TMEM187Q14656 261 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 PLPPR5Q32ZL2 321 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 DNM1P46Q6ZS02 220 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 TMEM204Q9BSN7 226 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 UCK1Q9HA47 277 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 TREM2Q9NZC2 230 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 SHISA7A6NL88 538 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 DBX1A6NMT0 343 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 C2CD4DB7Z1M9 353 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 GATCO43716 136 aaKnown RBP12.56□□□□□ -0.4
PTPRN-201ENST00000295718 GRPP07492 148 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 EGR1P18146 543 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 SSR4P51571 173 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 LHFPL2Q6ZUX7 228 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CPT1CQ8TCG5 803 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 ADGRG7Q96K78 797 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 NOSIPQ9Y314 301 aaKnown RBP12.56□□□□□ -0.4
PTPRN-201ENST00000295718 HDGFL3Q9Y3E1 203 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 THSD7BQ9C0I4 1608 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 NBASA2RRP1 2371 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 LOC390937A0A1W2PQ73 354 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CLEC18AA5D8T8 446 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 GDF9O60383 454 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 FGF7P21781 194 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 ANOS1P23352 680 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 IL2RGP31785 369 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CCR5P51681 352 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CASP6P55212 293 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CLEC18CQ8NCF0 446 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 SPSB1Q96BD6 273 aa12.56□□□□□ -0.4
PTPRN-201ENST00000295718 CDCA3Q99618 268 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-201ENST00000295718 E9PLN8 166 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 COL19A1Q14993 1142 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 NTNG2Q96CW9 530 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 FOXB1Q99853 325 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 GPR27Q9NS67 375 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 SERTAD4Q9NUC0 356 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 WBP1LQ9NX94 342 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 PRRC2CQ9Y520 2896 aaKnown RBP12.55□□□□□ -0.4
PTPRN-201ENST00000295718 TRBV6-7A0A0A0MS04 114 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 ZNF729A6NN14 1252 aaPredicted RBP12.55□□□□□ -0.4
PTPRN-201ENST00000295718 ANKRD30BLA7E2S9 258 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 ZNF737O75373 536 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 PIAS2O75928 621 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 TIAF1O95411 115 aa12.55□□□□□ -0.4
PTPRN-201ENST00000295718 CRYAAP02489 173 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms