RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FAM86C1Q9NVL1 165 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 IGKV1-6A0A0C4DH72 117 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 C3orf85A0A1B0GTC6 90 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 NKX2-8O15522 239 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 CTAG1AP78358 180 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 MPV17LQ2QL34 196 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 DPPA2Q7Z7J5 298 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 GCNT2Q8N0V5 402 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 SUMF2Q8NBJ7 301 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 OTOGLQ3ZCN5 2332 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 DSPP15924 2871 aaKnown RBP17.14■□□□□ 0.33
VPS53-201ENST00000291074 DNASE2O00115 360 aaPredicted RBP17.14■□□□□ 0.33
VPS53-201ENST00000291074 ID4P47928 161 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 GUCA2BQ16661 112 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 FBXW12Q6X9E4 464 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 ZNF818PQ6ZRF7 136 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 ADAT1Q9BUB4 502 aaKnown RBP17.14■□□□□ 0.33
VPS53-201ENST00000291074 ZDHHC11Q9H8X9 412 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 MMP26Q9NRE1 261 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 PLSCR2Q9NRY7 297 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 FAM96BQ9Y3D0 163 aa17.14■□□□□ 0.33
VPS53-201ENST00000291074 DMXL1Q9Y485 3027 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 PRR14LQ5THK1 2151 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 TK1P04183 234 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 TBC1D26Q86UD7 250 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 POM121Q96HA1 1249 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 USB1Q9BQ65 265 aaKnown RBP17.13■□□□□ 0.33
VPS53-201ENST00000291074 E5RGE8 158 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 TOR1AO14656 332 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 ATG12O94817 140 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 Q6ZS49 121 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 GAPTQ8N292 157 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 TMEM178AQ8NBL3 297 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 SMIM8Q96KF7 97 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 TSNAXQ99598 290 aaKnown RBP17.13■□□□□ 0.33
VPS53-201ENST00000291074 NKX6-2Q9C056 277 aaPredicted RBP17.13■□□□□ 0.33
VPS53-201ENST00000291074 PARP12Q9H0J9 701 aaKnown RBP17.13■□□□□ 0.33
VPS53-201ENST00000291074 OPA3Q9H6K4 179 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 LHX6Q9UPM6 363 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 NSG2Q9Y328 171 aa17.13■□□□□ 0.33
VPS53-201ENST00000291074 KCNJ3P48549 501 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 TNFSF10P50591 281 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 GNG3P63215 75 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 EIF5AP63241 154 aaKnown RBP17.12■□□□□ 0.33
VPS53-201ENST00000291074 TREM1Q9NP99 234 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 TRAV24A0A0B4J272 114 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 IGHV3-64DA0A0J9YX35 117 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 NKX2-6A6NCS4 301 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 HSD17B6O14756 317 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 ERVS71-1P61550 626 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 SUMF1Q8NBK3 374 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 MRPL30Q8TCC3 161 aaKnown RBP17.12■□□□□ 0.33
VPS53-201ENST00000291074 PLEKHA2Q9HB19 425 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 WFDC1Q9HC57 220 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 RCL1Q9Y2P8 373 aaKnown RBP17.12■□□□□ 0.33
VPS53-201ENST00000291074 MPC1Q9Y5U8 109 aa17.12■□□□□ 0.33
VPS53-201ENST00000291074 CNOT1A5YKK6 2376 aaKnown RBP17.12■□□□□ 0.33
VPS53-201ENST00000291074 F12P00748 615 aaPredicted RBP17.11■□□□□ 0.33
VPS53-201ENST00000291074 CCL11P51671 97 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 PJVKQ0ZLH3 352 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 P4HA3Q7Z4N8 544 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 ZNF573Q86YE8 665 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 ZNF565Q8N9K5 539 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 DEFB124Q8NES8 71 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 NANOS1Q8WY41 292 aaKnown RBP17.11■□□□□ 0.33
VPS53-201ENST00000291074 TMEM222Q9H0R3 208 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 GP6Q9HCN6 339 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 SPAARA0A1B0GVQ0 90 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 TRDCB7Z8K6 153 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 AGPAT2O15120 278 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 IDH3GP51553 393 aaPredicted RBP17.11■□□□□ 0.33
VPS53-201ENST00000291074 SOX8P57073 446 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 ZNF169Q14929 603 aaPredicted RBP17.11■□□□□ 0.33
VPS53-201ENST00000291074 LDLRAD3Q86YD5 345 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 PUSL1Q8N0Z8 303 aaKnown RBP17.11■□□□□ 0.33
VPS53-201ENST00000291074 FAM58AQ8N1B3 248 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 CCL28Q9NRJ3 127 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 UBE2J1Q9Y385 318 aaPredicted RBP17.11■□□□□ 0.33
VPS53-201ENST00000291074 ATP23Q9Y6H3 246 aa17.11■□□□□ 0.33
VPS53-201ENST00000291074 OR5B21A6NL26 309 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 LYZL6O75951 148 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 JTBO76095 146 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 GAPDHP04406 335 aaKnown RBP17.1■□□□□ 0.33
VPS53-201ENST00000291074 GLAP06280 429 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 SULT1A2P50226 295 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 EIF5AL1Q6IS14 154 aaKnown RBP17.1■□□□□ 0.33
VPS53-201ENST00000291074 WDR86Q86TI4 376 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 DMBX1Q8NFW5 382 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 TMED3Q9Y3Q3 217 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 ST8SIA3O43173 380 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 TNFSF12O43508 249 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 FDCSPQ8NFU4 85 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 OR4D5Q8NGN0 318 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 SAT2Q96F10 170 aaPredicted RBP17.1■□□□□ 0.33
VPS53-201ENST00000291074 OR51I2Q9H344 312 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 RHOFQ9HBH0 211 aa17.1■□□□□ 0.33
VPS53-201ENST00000291074 TRAV39A0A0B4J263 110 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 F8W036 122 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 MUC1P15941 1255 aaPredicted RBP17.09■□□□□ 0.33
VPS53-201ENST00000291074 IGHV1-2P23083 117 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms