RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 DNAJC13O75165 2243 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 A0A1W2PR80 420 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 DEFB108AA8MXU0 73 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 EML2O95834 649 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 FAM109BQ6ICB4 259 aaPredicted RBP16.83■□□□□ 0.28
UPF1-201ENST00000262803 OR2M3Q8NG83 312 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 OR4A4PQ8NGN8 299 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 RFESDQ8TAC1 157 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 HRKO00198 91 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 CXCL3P19876 107 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 HERVK_113P61574 105 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 KCNMB1Q16558 191 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 PMS2CLQ68D20 193 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 FZR1Q9UM11 496 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 PATE4P0C8F1 98 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 HTR1DP28221 377 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 TMPRSS3P57727 454 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 RBPMS2Q6ZRY4 209 aaKnown RBP16.82■□□□□ 0.28
UPF1-201ENST00000262803 GPA33Q99795 319 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 RD3LP0DJH9 198 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 ERVFRD-1P60508 538 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 C3orf80F5H4A9 247 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 NQO2P16083 231 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 ZNF596Q8TC21 504 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 RAB33BQ9H082 229 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 IGSF23A1L1A6 192 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 OR4C45A6NMZ5 311 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 TMPRSS2O15393 492 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 ZNF737O75373 536 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 ZFP36L2P47974 494 aaKnown RBP16.82■□□□□ 0.28
UPF1-201ENST00000262803 OR10AC1Q8NH08 325 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 LILRB1Q8NHL6 650 aaPredicted RBP16.82■□□□□ 0.28
UPF1-201ENST00000262803 FGF11Q92914 225 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 SLC35B3Q9H1N7 401 aa16.82■□□□□ 0.28
UPF1-201ENST00000262803 ATG2BQ96BY7 2078 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 ADAP1O75689 374 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 GALR1P47211 349 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 HLA-DRB3P79483 266 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 FLYWCH2Q96CP2 140 aaKnown RBP16.81■□□□□ 0.28
UPF1-201ENST00000262803 OR5AC1P0C628 307 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 VDAC1P21796 283 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 CCKARP32238 428 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 UBE2L3P68036 154 aaKnown RBP16.81■□□□□ 0.28
UPF1-201ENST00000262803 ZP4Q12836 540 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 RTP5Q14D33 572 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 ZNF79Q15937 498 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 GTF2H5Q6ZYL4 71 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 ANAPC16Q96DE5 110 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 GPR27Q9NS67 375 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 SYNGR2O43760 224 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 DEDDO75618 318 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 IQCJQ1A5X6 159 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 PRSS3P2Q8NHM4 247 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 FBXL17Q9UF56 701 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 TCAPO15273 167 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 AGFG2O95081 481 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 C1QCP02747 245 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 TMEM91Q6ZNR0 172 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 MOGAT3Q86VF5 341 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 PRR7Q8TB68 274 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 CLN8Q9UBY8 286 aa16.81■□□□□ 0.28
UPF1-201ENST00000262803 FAM24AA6NFZ4 105 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 SHISA5Q8N114 240 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 COX6B1P14854 86 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 PMELP40967 661 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 KRTDAPP60985 99 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 RIGQ13278 110 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 DYNLRB2Q8TF09 96 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 NAT8BQ9UHF3 227 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 INSIG2Q9Y5U4 225 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 FAM74A3Q4VXF1 159 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 TCTEX1D1Q8N7M0 179 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 WDR31Q8NA23 367 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 VAMP8Q9BV40 100 aa16.8■□□□□ 0.28
UPF1-201ENST00000262803 AHRRA9YTQ3 701 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 HPXP02790 462 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 BGLAPP02818 100 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 PRSS12P56730 875 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 SEZ6L2Q6UXD5 910 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 CRISP2P16562 243 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 CCL21O00585 134 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 GPR6P46095 362 aaPredicted RBP16.79■□□□□ 0.28
UPF1-201ENST00000262803 OR1L8Q8NGR8 309 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 RNF133Q8WVZ7 376 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 PTX4Q96A99 478 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 SCGB1C2P0DMR2 95 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 BCL3P20749 454 aa16.79■□□□□ 0.28
UPF1-201ENST00000262803 MARS2Q96GW9 593 aaKnown RBP16.79■□□□□ 0.28
UPF1-201ENST00000262803 FOCADQ5VW36 1801 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 RGS13O14921 159 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 CD1AP06126 327 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 HIST1H3AP68431 136 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 NAT8Q9UHE5 227 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 SF3B6Q9Y3B4 125 aaKnown RBP16.78■□□□□ 0.28
UPF1-201ENST00000262803 CDS2O95674 445 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 DAOP14920 347 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 TMEM30BQ3MIR4 351 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 NXF2Q9GZY0 626 aaKnown RBP16.78■□□□□ 0.28
UPF1-201ENST00000262803 TRAV8-7A0A075B6U6 113 aa16.78■□□□□ 0.28
UPF1-201ENST00000262803 PPIAL4EA0A075B759 164 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms