RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KLF14Q8TD94 323 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 RBPMSQ93062 196 aaKnown RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 YIPF5Q969M3 257 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 GRAMD2BQ96HH9 432 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 LURAP1Q96LR2 239 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 RANGRFQ9HD47 186 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 A0A1B0GU03 582 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 OR3A1P47881 315 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 GUCA2AQ02747 115 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 MEF2CQ06413 473 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 C6orf201Q7Z4U5 140 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 PRSS33Q8NF86 280 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 GTF3AQ92664 365 aaKnown RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 TREM2Q9NZC2 230 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 CSAG2Q9Y5P2 127 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 HTR2BP41595 481 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 GFRA1P56159 465 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 PFDN5Q99471 154 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 SAV1Q9H4B6 383 aaPredicted RBP11.8□□□□□ -0.52
LDLR-201ENST00000252444 TAF9BQ9HBM6 251 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 MLXQ9UH92 298 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 PCM1Q15154 2024 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 hCG_38984A0A1B0GV85 526 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 ZNF716A6NP11 495 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 SMPD2O60906 423 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 MIDNQ504T8 468 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 NCR3LG1Q68D85 454 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 SLC35E4Q6ICL7 350 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 DAZAP1Q96EP5 407 aaKnown RBP11.8□□□□□ -0.52
LDLR-201ENST00000252444 PLPPR2Q96GM1 343 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 TM2D1Q9BX74 207 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 BCL2L11O43521 198 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 CD40P25942 277 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 SRP14P37108 136 aaKnown RBP11.8□□□□□ -0.52
LDLR-201ENST00000252444 NANOS3P60323 173 aaKnown RBP11.8□□□□□ -0.52
LDLR-201ENST00000252444 ALKBH6Q3KRA9 238 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 FOXL2NBQ6ZUU3 175 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 NCCRP1Q6ZVX7 275 aaPredicted RBP11.8□□□□□ -0.52
LDLR-201ENST00000252444 PHYHIPLQ96FC7 376 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 RAXQ9Y2V3 346 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 UCP3P55916 312 aa11.8□□□□□ -0.52
LDLR-201ENST00000252444 C9orf170A2RU37 121 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 RAB29O14966 203 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 SLC6A1P30531 599 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 CRYBA2P53672 197 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 COMTD1Q86VU5 262 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 SUN5Q8TC36 379 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 MALSU1Q96EH3 234 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 OBSL1O75147 1896 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 HMSDA8MTL9 139 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 LPAR6P43657 344 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 A0A0B4J203 849 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 CCL2P13500 99 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 P2RY1P47900 373 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 SMIM15Q7Z3B0 74 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 HSD17B13Q7Z5P4 300 aaPredicted RBP11.79□□□□□ -0.52
LDLR-201ENST00000252444 LYG1Q8N1E2 194 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 LILRB4Q8NHJ6 448 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 OR2V2Q96R30 315 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 OR2D2Q9H210 308 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 KLK13Q9UKR3 277 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 V9GYH0 126 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 VDAC1P21796 283 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 C19orf57Q0VDD7 668 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 KLF9Q13886 244 aaPredicted RBP11.79□□□□□ -0.52
LDLR-201ENST00000252444 BAK1Q16611 211 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 POC1AQ8NBT0 407 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 OR1L4Q8NGR5 311 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 TRAF4Q9BUZ4 470 aaPredicted RBP11.79□□□□□ -0.52
LDLR-201ENST00000252444 SLC35D1Q9NTN3 355 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 KLK11Q9UBX7 282 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 C20orf204Q6ZNR8 217 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 LIAT1Q6ZQX7 453 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 CMTM2Q8TAZ6 248 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 CXorf58Q96LI9 332 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 PSG11Q9UQ72 335 aa11.79□□□□□ -0.52
LDLR-201ENST00000252444 DENND4CQ5VZ89 1909 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 KIAA1549LQ6ZVL6 1849 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 GEMIN2O14893 280 aaKnown RBP11.78□□□□□ -0.52
LDLR-201ENST00000252444 TMPRSS2O15393 492 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 TGOLN2O43493 480 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 PPYP01298 95 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 LIPFP07098 398 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 ADRA2AP08913 450 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 NHLH1Q02575 133 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 SRSF7Q16629 238 aaKnown RBP eCLIP11.78□□□□□ -0.52
LDLR-201ENST00000252444 TIGITQ495A1 244 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 DTX1Q86Y01 620 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 TGIF2LYQ8IUE0 185 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 TGIF2LXQ8IUE1 241 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 OR10A7Q8NGE5 316 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 AQP3Q92482 292 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 TINAGL1Q9GZM7 467 aaPredicted RBP11.78□□□□□ -0.52
LDLR-201ENST00000252444 TMEM231Q9H6L2 316 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 PARD6AQ9NPB6 346 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 TRAV8-7A0A075B6U6 113 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 K7N7A8 449 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 CORTO00230 105 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 F2RL2O00254 374 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 YIF1AO95070 293 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms