RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 FAM58AQ8N1B3 248 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 SPERTQ8NA61 448 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 SUMF2Q8NBJ7 301 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 OR4D5Q8NGN0 318 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 ZNF705EA8MWA4 302 aaPredicted RBP13.8□□□□□ -0.2
UBE3D-201ENST00000237186 GPR31O00270 319 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 ST8SIA3O43173 380 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 SLC34A2O95436 690 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 CDS2O95674 445 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 PJVKQ0ZLH3 352 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 TSC22D1Q15714 1073 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 C10orf91Q5T1B1 145 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.8□□□□□ -0.2
UBE3D-201ENST00000237186 MRPL30Q8TCC3 161 aaKnown RBP13.8□□□□□ -0.2
UBE3D-201ENST00000237186 BOD1Q96IK1 185 aa13.8□□□□□ -0.2
UBE3D-201ENST00000237186 DNAJC13O75165 2243 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 TRAV24A0A0B4J272 114 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 IGKV1-6A0A0C4DH72 117 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 J3QT63 122 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 GPR137BO60478 399 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 HOXB1P14653 301 aaPredicted RBP13.79□□□□□ -0.2
UBE3D-201ENST00000237186 CA6P23280 308 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 MRPL49Q13405 166 aaKnown RBP13.79□□□□□ -0.2
UBE3D-201ENST00000237186 GUSBP1Q15486 140 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 ATRAIDQ6UW56 229 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 PCSK4Q6UW60 755 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 SLC35G3Q8N808 338 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 OR52M1Q8NGK5 317 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 OR4A4PQ8NGN8 299 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 LRRC46Q96FV0 321 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 ASCL3Q9NQ33 180 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 TREM2Q9NZC2 230 aa13.79□□□□□ -0.2
UBE3D-201ENST00000237186 DUXBA0A1W2PPF3 345 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 NKX2-8O15522 239 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 ATG12O94817 140 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 CNOT4O95628 575 aaKnown RBP13.78□□□□□ -0.2
UBE3D-201ENST00000237186 SCGB1D2O95969 90 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 BLOC1S1P78537 153 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 PXDC1Q5TGL8 231 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 P4HA3Q7Z4N8 544 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 TBC1D26Q86UD7 250 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 ZNF565Q8N9K5 539 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 NEK7Q8TDX7 302 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 USB1Q9BQ65 265 aaKnown RBP13.78□□□□□ -0.2
UBE3D-201ENST00000237186 C11orf1Q9H5F2 150 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 POMT1Q9Y6A1 747 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 CLEC18AA5D8T8 446 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 ABCD4O14678 606 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 SMPD2O60906 423 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 GLI4P10075 376 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 RCC1P18754 421 aaPredicted RBP13.78□□□□□ -0.2
UBE3D-201ENST00000237186 IGHV1-2P23083 117 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 IL32P24001 234 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 Q6P435 159 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 ZNF818PQ6ZRF7 136 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 FAM214BQ7L5A3 538 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 CLEC18CQ8NCF0 446 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 DMBX1Q8NFW5 382 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 LYPD6BQ8NI32 183 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 ERGIC1Q969X5 290 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 ZNF488Q96MN9 340 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 RTL8AQ9BWD3 113 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 PARP11Q9NR21 331 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 DLL3Q9NYJ7 618 aa13.78□□□□□ -0.2
UBE3D-201ENST00000237186 LRP5LA4QPB2 252 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 WNT2P09544 360 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 RAC2P15153 192 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 UCP1P25874 307 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 ERVK11-1P61568 191 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 PMP22Q01453 160 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 INO80CQ6PI98 192 aaPredicted RBP13.77□□□□□ -0.21
UBE3D-201ENST00000237186 IGF2-ASQ6U949 168 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 BTNL8Q6UX41 500 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 C20orf204Q6ZNR8 217 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 Q8IYB0 196 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 SELENOHQ8IZQ5 122 aaKnown RBP13.77□□□□□ -0.21
UBE3D-201ENST00000237186 GAPTQ8N292 157 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 BOLLQ8N9W6 283 aaKnown RBP13.77□□□□□ -0.21
UBE3D-201ENST00000237186 FDCSPQ8NFU4 85 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 SECTM1Q8WVN6 248 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 NARS2Q96I59 477 aaKnown RBP13.77□□□□□ -0.21
UBE3D-201ENST00000237186 ABHD14BQ96IU4 210 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 CABLES2Q9BTV7 478 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 PLA2G2EQ9NZK7 142 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 ZDHHC8Q9ULC8 765 aa13.77□□□□□ -0.21
UBE3D-201ENST00000237186 CARHSP1Q9Y2V2 147 aaKnown RBP13.77□□□□□ -0.21
UBE3D-201ENST00000237186 IGKV1D-13A0A0B4J2D9 117 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 NPIPB11E5RHQ5 1161 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 IGKV1-13P0DP09 117 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 NBL1P41271 181 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 CAV2P51636 162 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 CCL11P51671 97 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 UBE2NP61088 152 aaKnown RBP13.76□□□□□ -0.21
UBE3D-201ENST00000237186 PPP1CBP62140 327 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 DEFA5Q01523 94 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 GABRA6Q16445 453 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 SHEQ5VZ18 495 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 Q6ZT83 130 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 C5orf24Q7Z6I8 188 aa13.76□□□□□ -0.21
UBE3D-201ENST00000237186 IL22RA2Q969J5 263 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms