RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 KIF1BPQ96EK5 621 aa25.01■■□□□ 1.59
PTCD3-220ENST00000627371 ADARB2Q9NS39 739 aaKnown RBP25.01■■□□□ 1.59
PTCD3-220ENST00000627371 FRAT2O75474 233 aaPredicted RBP25■■□□□ 1.59
PTCD3-220ENST00000627371 PHKA1P46020 1223 aa25■■□□□ 1.59
PTCD3-220ENST00000627371 CCDC102BQ68D86 513 aa25■■□□□ 1.59
PTCD3-220ENST00000627371 GNL3LQ9NVN8 582 aaKnown RBP25■■□□□ 1.59
PTCD3-220ENST00000627371 JAG2Q9Y219 1238 aa25■■□□□ 1.59
PTCD3-220ENST00000627371 COL1A1P02452 1464 aaPredicted RBP25■■□□□ 1.59
PTCD3-220ENST00000627371 SHTN1A0MZ66 631 aa24.99■■□□□ 1.59
PTCD3-220ENST00000627371 H7C1D1 291 aa24.99■■□□□ 1.59
PTCD3-220ENST00000627371 TOMM70O94826 608 aa24.99■■□□□ 1.59
PTCD3-220ENST00000627371 PNMA8AQ86V59 439 aaPredicted RBP24.99■■□□□ 1.59
PTCD3-220ENST00000627371 DCTPP1Q9H773 170 aa24.99■■□□□ 1.59
PTCD3-220ENST00000627371 SEMA3EO15041 775 aa24.98■■□□□ 1.59
PTCD3-220ENST00000627371 IRX6P78412 446 aaPredicted RBP24.98■■□□□ 1.59
PTCD3-220ENST00000627371 USP50Q70EL3 339 aaPredicted RBP24.98■■□□□ 1.59
PTCD3-220ENST00000627371 CERS5Q8N5B7 392 aa24.98■■□□□ 1.59
PTCD3-220ENST00000627371 AKAP11Q9UKA4 1901 aa24.97■■□□□ 1.59
PTCD3-220ENST00000627371 APBB1O00213 710 aa24.97■■□□□ 1.59
PTCD3-220ENST00000627371 USP17L8P0C7I0 530 aa24.97■■□□□ 1.59
PTCD3-220ENST00000627371 ZNF280AP59817 542 aaPredicted RBP24.97■■□□□ 1.59
PTCD3-220ENST00000627371 CHAF1AQ13111 956 aaPredicted RBP24.97■■□□□ 1.59
PTCD3-220ENST00000627371 MFSD14BQ5SR56 506 aa24.97■■□□□ 1.59
PTCD3-220ENST00000627371 GORABQ5T7V8 394 aa24.97■■□□□ 1.59
PTCD3-220ENST00000627371 EAF2Q96CJ1 260 aaPredicted RBP24.97■■□□□ 1.59
PTCD3-220ENST00000627371 IL1RAPL2Q9NP60 686 aa24.97■■□□□ 1.59
PTCD3-220ENST00000627371 EAPPQ56P03 285 aaPredicted RBP24.96■■□□□ 1.59
PTCD3-220ENST00000627371 RBM46Q8TBY0 533 aaKnown RBP24.96■■□□□ 1.59
PTCD3-220ENST00000627371 TBC1D22AQ8WUA7 517 aa24.96■■□□□ 1.59
PTCD3-220ENST00000627371 DBNDD2Q9BQY9 259 aa24.96■■□□□ 1.59
PTCD3-220ENST00000627371 DENND2AQ9ULE3 1009 aa24.96■■□□□ 1.59
PTCD3-220ENST00000627371 POTEIP0CG38 1075 aa24.95■■□□□ 1.58
PTCD3-220ENST00000627371 POTEJP0CG39 1038 aa24.95■■□□□ 1.58
PTCD3-220ENST00000627371 MMP14P50281 582 aa24.95■■□□□ 1.58
PTCD3-220ENST00000627371 HDAC1Q13547 482 aaPredicted RBP24.95■■□□□ 1.58
PTCD3-220ENST00000627371 LDHDQ86WU2 507 aa24.95■■□□□ 1.58
PTCD3-220ENST00000627371 KIAA0825Q8IV33 1275 aa24.95■■□□□ 1.58
PTCD3-220ENST00000627371 CLASRPQ8N2M8 674 aaKnown RBP24.95■■□□□ 1.58
PTCD3-220ENST00000627371 TRPM4Q8TD43 1214 aa24.95■■□□□ 1.58
PTCD3-220ENST00000627371 DBNLQ9UJU6 430 aaKnown RBP24.95■■□□□ 1.58
PTCD3-220ENST00000627371 PDS5AQ29RF7 1337 aaKnown RBP24.94■■□□□ 1.58
PTCD3-220ENST00000627371 ECM29Q5VYK3 1845 aa24.94■■□□□ 1.58
PTCD3-220ENST00000627371 ARID4AP29374 1257 aaPredicted RBP24.94■■□□□ 1.58
PTCD3-220ENST00000627371 SAMD7Q7Z3H4 446 aa24.94■■□□□ 1.58
PTCD3-220ENST00000627371 AACSQ86V21 672 aa24.94■■□□□ 1.58
PTCD3-220ENST00000627371 OGFOD1Q8N543 542 aa24.94■■□□□ 1.58
PTCD3-220ENST00000627371 LRRCC1Q9C099 1032 aa24.94■■□□□ 1.58
PTCD3-220ENST00000627371 CCDC8Q9H0W5 538 aaPredicted RBP24.94■■□□□ 1.58
PTCD3-220ENST00000627371 TLR7Q9NYK1 1049 aaKnown RBP24.94■■□□□ 1.58
PTCD3-220ENST00000627371 RASGRF1Q13972 1273 aa24.93■■□□□ 1.58
PTCD3-220ENST00000627371 WDR66Q8TBY9 1149 aa24.93■■□□□ 1.58
PTCD3-220ENST00000627371 POLR2AP24928 1970 aaKnown RBP24.93■■□□□ 1.58
PTCD3-220ENST00000627371 EGFRP00533 1210 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 CENPBP07199 599 aaPredicted RBP24.92■■□□□ 1.58
PTCD3-220ENST00000627371 UQCRFS1P1P0C7P4 283 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 KIF4BQ2VIQ3 1234 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 TBC1D10BQ4KMP7 808 aaPredicted RBP24.92■■□□□ 1.58
PTCD3-220ENST00000627371 CCDC158Q5M9N0 1113 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 SMC1BQ8NDV3 1235 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 MYOZ2Q9NPC6 264 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 HDAC9Q9UKV0 1011 aa24.92■■□□□ 1.58
PTCD3-220ENST00000627371 HIRAP54198 1017 aaPredicted RBP24.91■■□□□ 1.58
PTCD3-220ENST00000627371 SALL1Q9NSC2 1324 aa24.9■■□□□ 1.58
PTCD3-220ENST00000627371 F8W031 263 aaPredicted RBP24.9■■□□□ 1.58
PTCD3-220ENST00000627371 TTC39AQ5SRH9 613 aa24.9■■□□□ 1.58
PTCD3-220ENST00000627371 CHADLQ6NUI6 762 aa24.9■■□□□ 1.58
PTCD3-220ENST00000627371 ZNF512BQ96KM6 892 aaPredicted RBP24.9■■□□□ 1.58
PTCD3-220ENST00000627371 CLEC11AQ9Y240 323 aa24.9■■□□□ 1.58
PTCD3-220ENST00000627371 SUGT1Q9Y2Z0 365 aa24.9■■□□□ 1.58
PTCD3-220ENST00000627371 FSTL1Q12841 308 aa24.89■■□□□ 1.58
PTCD3-220ENST00000627371 RBM26Q5T8P6 1007 aaKnown RBP24.89■■□□□ 1.58
PTCD3-220ENST00000627371 ZC3H15Q8WU90 426 aaKnown RBP24.89■■□□□ 1.58
PTCD3-220ENST00000627371 TTF2Q9UNY4 1162 aaKnown RBP24.89■■□□□ 1.58
PTCD3-220ENST00000627371 IFIT2P09913 472 aaKnown RBP24.88■■□□□ 1.57
PTCD3-220ENST00000627371 MCAMP43121 646 aa24.88■■□□□ 1.57
PTCD3-220ENST00000627371 GRIK5Q16478 980 aa24.88■■□□□ 1.57
PTCD3-220ENST00000627371 SPATA5Q8NB90 893 aa24.88■■□□□ 1.57
PTCD3-220ENST00000627371 GCC1Q96CN9 775 aa24.88■■□□□ 1.57
PTCD3-220ENST00000627371 RWDD1Q9H446 243 aaPredicted RBP24.88■■□□□ 1.57
PTCD3-220ENST00000627371 HMG20BQ9P0W2 317 aa24.88■■□□□ 1.57
PTCD3-220ENST00000627371 MYO5AQ9Y4I1 1855 aaKnown RBP24.87■■□□□ 1.57
PTCD3-220ENST00000627371 SMARCA5O60264 1052 aaPredicted RBP24.87■■□□□ 1.57
PTCD3-220ENST00000627371 C1QTNF8P60827 252 aa24.87■■□□□ 1.57
PTCD3-220ENST00000627371 SCARF1Q14162 830 aa24.87■■□□□ 1.57
PTCD3-220ENST00000627371 ZGPATQ8N5A5 531 aaKnown RBP24.87■■□□□ 1.57
PTCD3-220ENST00000627371 PGAP2Q9UHJ9 254 aa24.87■■□□□ 1.57
PTCD3-220ENST00000627371 MYH2Q9UKX2 1941 aa24.86■■□□□ 1.57
PTCD3-220ENST00000627371 PI16Q6UXB8 463 aa24.86■■□□□ 1.57
PTCD3-220ENST00000627371 MTMR14Q8NCE2 650 aa24.86■■□□□ 1.57
PTCD3-220ENST00000627371 MAST3O60307 1309 aa24.86■■□□□ 1.57
PTCD3-220ENST00000627371 MAST2Q6P0Q8 1798 aa24.85■■□□□ 1.57
PTCD3-220ENST00000627371 ZBED3Q96IU2 234 aaPredicted RBP24.85■■□□□ 1.57
PTCD3-220ENST00000627371 BCL11AQ9H165 835 aa24.85■■□□□ 1.57
PTCD3-220ENST00000627371 SERPINA10Q9UK55 444 aa24.85■■□□□ 1.57
PTCD3-220ENST00000627371 DOCK2Q92608 1830 aa24.84■■□□□ 1.57
PTCD3-220ENST00000627371 WNT10BO00744 389 aa24.84■■□□□ 1.57
PTCD3-220ENST00000627371 PRDX5P30044 214 aa24.84■■□□□ 1.57
PTCD3-220ENST00000627371 CFAP100Q494V2 611 aa24.84■■□□□ 1.57
PTCD3-220ENST00000627371 MAP1SQ66K74 1059 aaPredicted RBP24.84■■□□□ 1.57
PTCD3-220ENST00000627371 TRPM7Q96QT4 1865 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms