RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 A0A1B0GUL6 1792 aa31.61■■■□□ 2.65
PTPRF-216ENST00000617451 COL1A1P02452 1464 aaPredicted RBP31.61■■■□□ 2.65
PTPRF-216ENST00000617451 FKBP1AP62942 108 aaKnown RBP31.61■■■□□ 2.65
PTPRF-216ENST00000617451 MKRN3Q13064 507 aaKnown RBP31.61■■■□□ 2.65
PTPRF-216ENST00000617451 LDHAL6AQ6ZMR3 332 aa31.61■■■□□ 2.65
PTPRF-216ENST00000617451 C9orf78Q9NZ63 289 aaPredicted RBP31.6■■■□□ 2.65
PTPRF-216ENST00000617451 SREBF2Q12772 1141 aa31.59■■■□□ 2.65
PTPRF-216ENST00000617451 TAF7LQ5H9L4 462 aa31.59■■■□□ 2.65
PTPRF-216ENST00000617451 ZNF296Q8WUU4 475 aaPredicted RBP31.59■■■□□ 2.65
PTPRF-216ENST00000617451 CNNM1Q9NRU3 951 aa31.59■■■□□ 2.65
PTPRF-216ENST00000617451 ANGEL1Q9UNK9 670 aaKnown RBP31.59■■■□□ 2.65
PTPRF-216ENST00000617451 PCDHAC2Q9Y5I4 1007 aa31.59■■■□□ 2.65
PTPRF-216ENST00000617451 F8W031 263 aaPredicted RBP31.58■■■□□ 2.65
PTPRF-216ENST00000617451 PLIN1O60240 522 aa31.58■■■□□ 2.65
PTPRF-216ENST00000617451 ALDH1L1O75891 902 aa31.58■■■□□ 2.65
PTPRF-216ENST00000617451 ZNF316A6NFI3 1004 aaPredicted RBP31.57■■■□□ 2.64
PTPRF-216ENST00000617451 CFAP100Q494V2 611 aa31.57■■■□□ 2.64
PTPRF-216ENST00000617451 NOM1Q5C9Z4 860 aaKnown RBP31.57■■■□□ 2.64
PTPRF-216ENST00000617451 SPRYD7Q5W111 196 aa31.57■■■□□ 2.64
PTPRF-216ENST00000617451 PPP2R3BQ9Y5P8 575 aa31.57■■■□□ 2.64
PTPRF-216ENST00000617451 SPDYE2BA6NHP3 402 aa31.56■■■□□ 2.64
PTPRF-216ENST00000617451 SPDYE6P0CI01 402 aa31.56■■■□□ 2.64
PTPRF-216ENST00000617451 PRMT6Q96LA8 375 aaPredicted RBP31.56■■■□□ 2.64
PTPRF-216ENST00000617451 SRCIN1Q9C0H9 1055 aa31.56■■■□□ 2.64
PTPRF-216ENST00000617451 FZD1Q9UP38 647 aa31.56■■■□□ 2.64
PTPRF-216ENST00000617451 GPR25O00155 361 aa31.55■■■□□ 2.64
PTPRF-216ENST00000617451 SOX10P56693 466 aa31.55■■■□□ 2.64
PTPRF-216ENST00000617451 PKN2Q16513 984 aaKnown RBP31.55■■■□□ 2.64
PTPRF-216ENST00000617451 MAP3K11Q16584 847 aa31.55■■■□□ 2.64
PTPRF-216ENST00000617451 SLC4A10Q6U841 1118 aa31.55■■■□□ 2.64
PTPRF-216ENST00000617451 CFHR5Q9BXR6 569 aa31.55■■■□□ 2.64
PTPRF-216ENST00000617451 JAG2Q9Y219 1238 aa31.55■■■□□ 2.64
PTPRF-216ENST00000617451 MYO1BO43795 1136 aa31.54■■■□□ 2.64
PTPRF-216ENST00000617451 ZEB1P37275 1124 aaPredicted RBP31.54■■■□□ 2.64
PTPRF-216ENST00000617451 FAM9BQ8IZU0 186 aa31.54■■■□□ 2.64
PTPRF-216ENST00000617451 CLRN2A0PK11 232 aa31.53■■■□□ 2.64
PTPRF-216ENST00000617451 HPS5Q9UPZ3 1129 aa31.53■■■□□ 2.64
PTPRF-216ENST00000617451 FAM205AQ6ZU69 1335 aa31.52■■■□□ 2.64
PTPRF-216ENST00000617451 SSC5DA1L4H1 1573 aa31.52■■■□□ 2.64
PTPRF-216ENST00000617451 PPP1R12BO60237 982 aaPredicted RBP31.52■■■□□ 2.64
PTPRF-216ENST00000617451 UBE4AQ14139 1066 aa31.52■■■□□ 2.64
PTPRF-216ENST00000617451 SLC10A4Q96EP9 437 aa31.52■■■□□ 2.64
PTPRF-216ENST00000617451 KAZALD1Q96I82 304 aa31.52■■■□□ 2.64
PTPRF-216ENST00000617451 ECM29Q5VYK3 1845 aa31.52■■■□□ 2.64
PTPRF-216ENST00000617451 AOX1Q06278 1338 aa31.51■■■□□ 2.64
PTPRF-216ENST00000617451 TDRD7Q8NHU6 1098 aaKnown RBP31.51■■■□□ 2.63
PTPRF-216ENST00000617451 SUCLG2Q96I99 432 aa31.51■■■□□ 2.63
PTPRF-216ENST00000617451 PDE4DIPQ5VU43 2346 aa31.5■■■□□ 2.63
PTPRF-216ENST00000617451 SUPT20HL1Q3ZLR7 823 aa31.5■■■□□ 2.63
PTPRF-216ENST00000617451 R3HDMLQ9H3Y0 253 aa31.5■■■□□ 2.63
PTPRF-216ENST00000617451 VEZTQ9HBM0 779 aa31.5■■■□□ 2.63
PTPRF-216ENST00000617451 NBPF7P0C2Y1 421 aaPredicted RBP31.49■■■□□ 2.63
PTPRF-216ENST00000617451 FAM84BQ96KN1 310 aaPredicted RBP31.49■■■□□ 2.63
PTPRF-216ENST00000617451 PUS3Q9BZE2 481 aaKnown RBP31.49■■■□□ 2.63
PTPRF-216ENST00000617451 UTYO14607 1347 aa31.49■■■□□ 2.63
PTPRF-216ENST00000617451 MANSC4A6NHS7 340 aaPredicted RBP31.48■■■□□ 2.63
PTPRF-216ENST00000617451 UNCXA6NJT0 531 aa31.48■■■□□ 2.63
PTPRF-216ENST00000617451 HIBADHP31937 336 aaKnown RBP31.48■■■□□ 2.63
PTPRF-216ENST00000617451 GYG1P46976 350 aa31.48■■■□□ 2.63
PTPRF-216ENST00000617451 RBM5P52756 815 aaKnown RBP eCLIP31.48■■■□□ 2.63
PTPRF-216ENST00000617451 INHBEP58166 350 aa31.48■■■□□ 2.63
PTPRF-216ENST00000617451 NBPF12Q5TAG4 269 aaPredicted RBP31.48■■■□□ 2.63
PTPRF-216ENST00000617451 CLMNQ96JQ2 1002 aa31.48■■■□□ 2.63
PTPRF-216ENST00000617451 RIPOR2Q9Y4F9 1068 aa31.48■■■□□ 2.63
PTPRF-216ENST00000617451 ZNF521Q96K83 1311 aa31.48■■■□□ 2.63
PTPRF-216ENST00000617451 SLC34A2O95436 690 aa31.47■■■□□ 2.63
PTPRF-216ENST00000617451 ALDH1A1P00352 501 aa31.47■■■□□ 2.63
PTPRF-216ENST00000617451 ZBTB48P10074 688 aaPredicted RBP31.47■■■□□ 2.63
PTPRF-216ENST00000617451 MFSD14BQ5SR56 506 aa31.47■■■□□ 2.63
PTPRF-216ENST00000617451 FKTNO75072 461 aa31.46■■■□□ 2.63
PTPRF-216ENST00000617451 RASA3Q14644 834 aa31.46■■■□□ 2.63
PTPRF-216ENST00000617451 WNK4Q96J92 1243 aa31.46■■■□□ 2.63
PTPRF-216ENST00000617451 SERPINA10Q9UK55 444 aa31.46■■■□□ 2.63
PTPRF-216ENST00000617451 IFNL1Q8IU54 200 aa31.45■■■□□ 2.63
PTPRF-216ENST00000617451 TTF2Q9UNY4 1162 aaKnown RBP31.45■■■□□ 2.63
PTPRF-216ENST00000617451 USP2O75604 605 aaPredicted RBP31.44■■■□□ 2.62
PTPRF-216ENST00000617451 BICC1Q9H694 974 aaKnown RBP31.44■■■□□ 2.62
PTPRF-216ENST00000617451 ZBTB4Q9P1Z0 1013 aaPredicted RBP31.44■■■□□ 2.62
PTPRF-216ENST00000617451 MROH5Q6ZUA9 1318 aa31.44■■■□□ 2.62
PTPRF-216ENST00000617451 IREB2P48200 963 aaKnown RBP31.43■■■□□ 2.62
PTPRF-216ENST00000617451 RABL6Q3YEC7 729 aaPredicted RBP31.43■■■□□ 2.62
PTPRF-216ENST00000617451 SPDYE2Q495Y8 402 aa31.43■■■□□ 2.62
PTPRF-216ENST00000617451 FBXO46Q6PJ61 603 aaPredicted RBP31.43■■■□□ 2.62
PTPRF-216ENST00000617451 MRPL50Q8N5N7 158 aaKnown RBP31.42■■■□□ 2.62
PTPRF-216ENST00000617451 ZNF70Q9UC06 446 aaPredicted RBP31.42■■■□□ 2.62
PTPRF-216ENST00000617451 TNFAIP1Q13829 316 aa31.41■■■□□ 2.62
PTPRF-216ENST00000617451 IGF2BP3O00425 579 aaKnown RBP eCLIP31.4■■■□□ 2.62
PTPRF-216ENST00000617451 FBXO33Q7Z6M2 555 aa31.4■■■□□ 2.62
PTPRF-216ENST00000617451 DZIP1LQ8IYY4 767 aaKnown RBP31.4■■■□□ 2.62
PTPRF-216ENST00000617451 ANKRD44Q8N8A2 993 aa31.4■■■□□ 2.62
PTPRF-216ENST00000617451 TDRD3Q9H7E2 651 aaKnown RBP31.4■■■□□ 2.62
PTPRF-216ENST00000617451 LRRC24Q50LG9 513 aa31.39■■■□□ 2.62
PTPRF-216ENST00000617451 ANKRD13AQ8IZ07 590 aa31.39■■■□□ 2.62
PTPRF-216ENST00000617451 GJA5P36382 358 aa31.38■■■□□ 2.61
PTPRF-216ENST00000617451 CRKP46108 304 aa31.38■■■□□ 2.61
PTPRF-216ENST00000617451 LAMB1P07942 1786 aa31.38■■■□□ 2.61
PTPRF-216ENST00000617451 HTTP42858 3142 aa31.38■■■□□ 2.61
PTPRF-216ENST00000617451 VPS37DQ86XT2 251 aa31.37■■■□□ 2.61
PTPRF-216ENST00000617451 TEPSINQ96N21 525 aa31.37■■■□□ 2.61
PTPRF-216ENST00000617451 PTPRCP08575 1304 aa31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms